Super pangenome of Vitis empowers identification of downy mildew resistance genes for grapevine improvement
文献类型： 外文期刊
作者： Guo, Li 1 ; Wang, Xiangfeng 1 ; Ayhan, Dilay Hazal 1 ; Rhaman, Mohammad Saidur 1 ; Yan, Ming 1 ; Jiang, Jianfu 2 ; Wang, Dongyue 1 ; Zheng, Wei 1 ; Mei, Junjie 1 ; Ji, Wei 1 ; Jiao, Jian 1 ; Chen, Shaoying 1 ; Sun, Jie 1 ; Yi, Shu 1 ; Meng, Dian 1 ; Wang, Jing 1 ; Bhuiyan, Mohammad Nasim 1 ; Qin, Guochen 1 ; Guo, Linling 1 ; Yang, Qingxian 1 ; Zhang, Xuenan 1 ; Sun, Haisheng 1 ; Liu, Chonghuai 2 ; Deng, Xing Wang 1 ; Ye, Wenxiu 1 ;
作者机构： 1.Peking Univ, Inst Adv Agr Sci, Shandong Key Lab Precis Mol Crop Design & Breeding, Shandong Lab Adv Agr Sci Weifang, Weifang, Peoples R China
2.Chinese Acad Agr Sci, Zhengzhou Fruit Res Inst, Zhengzhou, Peoples R China
3.Shanxi Agr Univ, Coll Hort, Taigu, Peoples R China
4.Henan Agr Univ, Coll Hort, Zhengzhou, Peoples R China
5.Peking Univ, Sch Adv Agr Sci, State Key Lab Prot & Plant Gene Res, Beijing, Peoples R China
6.Peking Univ, Sch Life Sci, State Key Lab Prot & Plant Gene Res, Beijing, Peoples R China
期刊名称：NATURE GENETICS （ 影响因子：29.0； 五年影响因子：37.4 ）
ISSN： 1061-4036
年卷期： 2025 年 57 卷 3 期
页码：
收录情况： SCI
摘要： Grapevine (Vitis) is one of the oldest domesticated fruit crops with great cultural and economic importance. Here we assembled and annotated haplotype-resolved genomes of 72 global Vitis accessions including 25 wild and 47 cultivated grapevines, among which genomes for 60 grapevines are newly released. Haplotype-aware phylogenomics disentangled the mysterious hybridization history of grapevines, revealing the enormous genetic diversity of the Vitis genus. Pangenomic analysis reveals that European cultivars, more susceptible to the destructive disease downy mildew (DM), have a smaller repertoire of resistance genes in the NLR family encoding the TIR-NBARC-LRR domain. Through extensive structural variation (SV) characterization, phenotyping, DM-infection transcriptome profiling of 113 Vitis accessions, and SV-expression quantitative trait loci analysis, we have identified over 63 SVs and their relevant genes significantly associated with DM resistance, exemplified by a lysine histidine transporter, VvLHT8. This haplotype-resolved super pangenome of the Vitis genus will accelerate breeding and enrich our understanding of the evolution and biology of grapevines.
- 相关文献
作者其他论文 更多>>
-
4D DIA proteomic analysis of gender and age influences on meat quality and flavor in Hetian white sheep
作者：Wang, Jing;Wu, Yun;Wang, Jing;Lin, Hengxun;Zhang, Chunhui;Wang, Quanfeng;Zhang, Chunhui
关键词：Hetian white sheep; Mutton; Proteomic; Meat quality; Flavor
-
Chemotaxis of rhizosphere Pseudomonas sp. induced by foliar spraying of lanthanum reduces cadmium uptake by pakchoi
作者：Wang, Meng;Yu, Lei;Wang, Jing;Qin, Luyao;Sun, Xiaoyi;Liu, Jiaxiao;Han, Yun;Chen, Shibao
关键词：Cadmium toxicity; Plant growth; Root exudates; Pseudomonas; Chemotaxis
-
Dual Regulation of Ionic Effect on Zostera marina L. Seed Germination and Leaf Differentiation in Low-Salinity Conditions
作者：Li, Peilong;Gao, Yaping;Jiang, Zengjie;Wang, Linjie;Li, Peilong;Jiang, Zengjie;Sun, Xiaoli;Wang, Jiaqi;Wang, Jing;Sui, Haidong;Wang, Junwei;Zhang, Yitao
关键词：germination; leaf differentiation; osmotic pressure; biochemical traits; antioxidant enzymes
-
Epigenetics in the modern era of crop improvements
作者：Xue, Yan;Deng, Xing Wang;Cao, Xiaofeng;Deng, Xian;Cao, Xiaofeng;Deng, Xian;Chen, Xiangsong;Yang, Hongchun;Ding, Yong;Dong, Aiwu;Liu, Bing;Ren, Guodong;Zhang, Yijing;Duan, Cheng-Guo;Fang, Xiaofeng;Qi, Yijun;Gong, Lei;Liu, Bao;Xu, Zheng-Yi;Gong, Zhizhong;Gong, Zhizhong;Gu, Xiaofeng;He, Chongsheng;He, Hang;He, Shengbo;He, Xin-Jian;He, Yan;Tian, Zhixi;He, Yuehui;Jia, Guifang;Wang, Yuan;Jiang, Danhua;Song, Xianwei;Jiang, Jianjun;Lai, Jinsheng;Lai, Jinsheng;Lai, Jinsheng;Lai, Jinsheng;Lai, Jinsheng;Lang, Zhaobo;Zhu, Jian-Kang;Li, Chenlong;Li, Qing;Li, Xingwang;Yan, Wenhao;Zhou, Dao-Xiu;Luo, Xiao;Qian, Weiqiang;Song, Qingxin;Wang, Jia-Wei;Xu, Lin;Wu, Liang;Wu, Zhe;Xia, Rui;Xiao, Jun;Zhao, Yusheng;Zhai, Jixian;Zhong, Xuehua;Zhou, Dao-Xiu;Zhou, Ming;Zhou, Yue;Zhu, Bo;Liu, Qikun
关键词：epigenetics; plant development; plant immunity; crop improvement; stress responses
-
Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes (Bubalus bubalis)
作者：Si, Jingfang;Dai, Dongmei;Dhakal, Aashish;Omar, Abdullah Ibne;Zhang, Yi;Gorkhali, Neena Amatya;Sapkota, Saroj;Wang, Mingshan;Wang, Sheng;Wu, Dong-Dong;Kadel, Ram Chandra;Sadaula, Amir;Faruque, Md Omar;Sari, Eka Meutia;Ashari, Hidayat;Dagong, Muhammad Ihsan Andi;Yindee, Marnoch;Rushdi, Hossam E.;Amin, Ahmed;Radwan, Mohamed A.;Elregalaty, Hussein;Pham, Lan Doan;Hulugalla, W. M. M. P.;Silva, G. L. L. Pradeepa;Zheng, Wei;Mansoor, Shahid;Ali, Muhammad Basil;Mansoor, Shahid;Vahidi, Farhad;Al-Bayatti, Sahar Ahmed;Pauciullo, Alfredo;Lenstra, Johannes A.;Barker, J. Stuart F.;Fang, Lingzhao;Han, Jianlin
关键词：buffalo;
CSN2 ;MC1R ; population genomics; selection; single-cell RNA-seq -
Ontogeny and function of the intestinal epithelial and innate immune cells during early development of chicks: to explore in ovo immunomodulatory nutrition
作者：Ayalew, Habtamu;Xu, Changchun;Sanchez, Astrid Lissette Barreto;Li, Siman;Wang, Jing;Wu, Shugeng;Qiu, Kai;Qi, Guanghai;Zhang, Haijun;Ayalew, Habtamu;Adane, Assefa
关键词：Chick; Innate immunity cell; Intestinal epithelial cell; In ovo nutrition; Development
-
Effects of dietary chlorogenic acid supplementation on laying performance, egg quality, antioxidant capacity, and liver lipid metabolism in late-peak laying hens
作者：Zhao, Haitong;Guo, Lianxiang;Yan, Ming;Sun, Yue;Zhu, Mingkun;Zhao, Haitong;Guo, Lianxiang;Yan, Ming;Sun, Yue;Zhu, Mingkun;Hong, Yan
关键词：Chlorogenic acid; laying performance; antioxidant capacity; liver lipid metabolism; laying hen
