Genome-wide characterization and sequence polymorphism analyses of cysteine-rich poly comb-like protein in Glycine max
文献类型： 外文期刊
作者： Nisar, Tayyaba 1 ; Tahir, Muhammad Hammad Nadeem 1 ; Iqbal, Shahid 1 ; Sajjad, Muhammad 2 ; Nadeem, Muhammad Azhar 3 ; Qanmber, Ghulam 4 ; Baig, Ayesha 5 ; Khan, Zulqurnain 1 ; Zhao, Zhengyun 6 ; Geng, Zhide 6 ; Ur Rehman, Shoaib 1 ;
作者机构： 1.Muhammad Nawaz Shareef MNS Univ Agr, Inst Plant Breeding & Biotechnol, Multan, Pakistan
2.Technol Sustainable Dev South COMSATS Univ Islamab, Dept Biosci, Commiss Sci, Islamabad, Pakistan
3.Sivas Univ Sci & Technol, Fac Agr Sci & Technol, Sivas, Turkey
4.Cotton Res Inst Chinese Acad Agr Sci, State Key Lab Cotton Biol, Anyang, Peoples R China
5.Univ Islamabad, Islamabad, Pakistan
6.Yunnan Acad Agr Sci, Inst Food Crops, Kunming, Peoples R China
关键词： soybean; phylogenetic analyses; kompetitive allele specific PCR; association analyses; drought; GmCPP
期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：6.627； 五年影响因子：7.255 ）
ISSN： 1664-462X
年卷期： 2022 年 13 卷
页码：
收录情况： SCI
摘要： Cysteine-rich poly comb-like protein (CPP) is a member of cysteine-rich transcription factors that regulates plant growth and development. In the present work, we characterized twelve CPP transcription factors encoding genes in soybean (Glycine max). Phylogenetic analyses classified CPP genes into six clades. Sequence logos analyses between G. max and G. soja amino acid residues exhibited high conservation. The presence of growth and stress-related cis-acting elements in the upstream regions of GmCPPs highlight their role in plant development and tolerance against abiotic stress. Ka/Ks levels showed that GmCPPs experienced limited selection pressure with limited functional divergence arising from segmental or whole genome duplication events. By using the PAN-genome of soybean, a single nucleotide polymorphism was identified in GmCPP-6. To perform high throughput genotyping, a kompetitive allele-specific PCR (KASP) marker was developed. Association analyses indicated that GmCPP-6-T allele of GmCPP-6 (in exon region) was associated with higher thousand seed weight under both water regimes (well-water and water-limited). Taken together, these results provide vital information to further decipher the biological functions of CPP genes in soybean molecular breeding.
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