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Complete genome sequence analysis of two Citrus tatter leaf virus (CTLV) isolates from China

文献类型: 外文期刊

作者: Song Zhen 1 ; Li Zhong-an 1 ; Liu Ke-hong 1 ; Zhou Chang-yong 1 ;

作者机构: 1.Chinese Acad Agr Sci, Southwest Univ, Citrus Res Inst, Chongqing 400712, Peoples R China

关键词: Citrus tatter leaf virus;Apple stem grooving virus;phylogenetic analysis;genome

期刊名称:JOURNAL OF INTEGRATIVE AGRICULTURE ( 影响因子:2.848; 五年影响因子:2.979 )

ISSN: 2095-3119

年卷期: 2015 年 14 卷 5 期

页码:

收录情况: SCI

摘要: In order to understand molecular characterization of Citrus tatter leaf virus (CTLV) isolated from China, full-length cDNAs of CTLV-MTH and CTLV-XHC from Citrus reticulata and Citrus sinensis were cloned and sequenced based on whole-genome amplification by RT-PCR. The complete nucleotide sequences of CTLV-MTH and CTLV-XHC were determined to be 6497 nucleotides in length and shared 79.9-91.0% and 78.8-98.0% nucleotide sequence identity, respectively, with other Apple stem grooving virus (ASGV) or CTLV strains available in GenBank. Unexpectedly, CTLV-MTH showed the highest nucleotide sequence identity (91%) with an apple isolate of ASGV, followed by 86.5% with ASGV-HH and 85.7% with ASGV-CHN. Furthermore, CTLV-MTH and three ASGV strains were grouped to a separate cluster in the phylogenetic tree, suggesting it has a closer relationship to ASGV than to CTLV. Therefore, it can be concluded roughly that CTLV may be not a distinct strains of ASGV. We proposed that Citrus tatter leaf virus should be renamed Apple stem grooving virus.

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