文献类型: 外文期刊
作者: Yang, Wenjie 1 ; Jiang, Changci 1 ; Bi, Changwei 1 ; Zhao, Zhuang 1 ; Fu, Chenlong 1 ; Li, Fangping 3 ; Hou, Zhuangwei 4 ; Hu, Quanjun 2 ; Wang, Zefu 1 ;
作者机构: 1.Nanjing Forestry Univ, Coll Ecol & Environm, Coinnovat Ctr Sustainable Forestry Southern China, State Key Lab Tree Genet & Breeding, Nanjing 210037, Peoples R China
2.Sichuan Univ, Coll Life Sci, Minist Educ, Key Lab Bioresource & Ecoenvironm, Chengdu 610065, Peoples R China
3.South China Agr Univ, Guangdong Prov Key Lab Plant Mol Breeding, State Key Lab Conservat & Utilizat Subtrop Agrobio, Guangzhou 510642, Peoples R China
4.Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Shenzhen Branch, Guangdong Lab Lingnan Modern Agr,Minist Agr & Rur, Shenzhen 518000, Peoples R China
期刊名称:SCIENTIFIC DATA ( 影响因子:6.9; 五年影响因子:8.7 )
ISSN:
年卷期: 2025 年 12 卷 1 期
页码:
收录情况: SCI
摘要: Oxalis articulata is a widely distributed perennial herb known for its adaptability to diverse environmental conditions. Here, we report the first haplotype-resolved, chromosome-scale genome assembly for O. articulata (Oxalidaceae), generated through PacBio HiFi long reads and Hi-C technology. The resulting assembly comprises two haplotypes with sizes of 377.04 Mb (contig N50 = 31.13 Mb) and 342.70 Mb (contig N50 = 47.46 Mb), respectively. We predicted 36,063 protein-coding genes (94.33% functionally annotated) and 38,292 protein-coding genes (93.80% functionally annotated) in the two haplotypes, respectively. This high-quality genome assembly lays a solid groundwork for future initiatives in ecological and biochemical research for O. articulata.
- 相关文献
作者其他论文 更多>>
-
Haplotype-resolved chromosomal-level genome assembly of Prunus mahaleb
作者:Fu, Chenlong;Zhao, Zhuang;Wang, Zefu;Fu, Chenlong;Li, Meng;Wang, Xianrong;Yu, Lixia;Hou, Zhuangwei
关键词:
-
Genomic variation and evolutionary patterns in organelle genomes between annual and perennial Glycine species
作者:Yang, Xuchen;He, Jiaxian;Zhou, Minghui;Kong, Fanjiang;Li, Meina;Bi, Changwei;Wang, Zefu;Kong, Jiali;Wang, Jie;Wu, Zhiqiang
关键词:
Glycine ; Mitochondrion; Plastid; Intracellular transfer -
A gap-free reference genome of Populus deltoides provides insights into karyotype evolution of Salicaceae
作者:Bi, Changwei;Dai, Xiaogang;Wu, Huaitong;Wang, Zefu;Yin, Tongming;Bi, Changwei;Sun, Ning;Hou, Zhuangwei;Han, Fuchuan
关键词:
Populus ; Gap-free genome assembly; Genome evolution; Gene family; Ancestral karyotype reconstruction -
The telomere-to-telomere genome of Sanicula chinensis unveils genetic underpinnings of low furanocoumarin diversity and content in one basal lineage of Apiaceae
作者:He, Weijun;Hu, Donghua;Guo, Miaoxian;Nie, Bao;Zhang, Guangpu;Jia, Yujie;Hou, Zhuangwei;Li, Cheng;Wang, Li;He, Weijun;Guo, Miaoxian;Zhang, Guangpu;Jia, Yujie;Twamley, Anthony;Hu, Donghua;Shu, Shaohua;Shao, Yizhen;Simonsen, Henrik Toft
关键词:telomere-to-telomere (T2T) genome;
Sanicula chinensis ; furanocoumarins; whole-genome duplication (WGD); prenyltransferase gene -
Genomic analyses of three Acanthus L. species provide insight into polyploidization-driven speciation and evolution
作者:Feng, Hui;Banerjee, Achyut Kumar;Peng, Hao;Zhao, Xuming;Yin, Minghui;Duan, Fuyuan;Huang, Yelin;Guo, Wuxia;Banerjee, Achyut Kumar;Hou, Zhuangwei
关键词:mangrove;
Acanthus ; polyploidization; evolution; speciation -
Haplotype-resolved genomes of octoploid species in Phyllanthaceae family reveal a critical role for polyploidization and hybridization in speciation
作者:Li, Fangping;Hou, Zhuangwei;Xu, Shiqiang;Li, Bin;Cai, Shike;Gu, Yan;Mei, Yu;Wang, Jihua;Li, Fangping;Liu, Jieying;Gan, Zhenpeng;Zhang, Xiufeng;Zhou, Xiaofan;Wang, Shaokui;Li, Fangping;Wang, Zefu;Hou, Zhuangwei;Han, Danlu;Hu, Haifei;Zhao, Junliang;Hu, Haifei;Zhao, Junliang;Hu, Haifei;Zhao, Junliang;Zhang, Jisen
关键词:Phyllanthaceae; chromosome-scale haplotype-resolved genome; octoploid species; speciation; polyploidization; hybridization
-
PMAT: an efficient plant mitogenome assembly toolkit using low-coverage HiFi sequencing data
作者:Bi, Changwei;Qu, Yanshu;Hou, Jing;Xu, Kewang;Xu, Li-an;Yin, Tongming;Bi, Changwei;Shen, Fei;Han, Fuchuan;He, Wenchuang;Wu, Zhiqiang
关键词:



