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Genome-wide insights into the nomenclature, evolution and expression of tobacco TIFY/JAZ genes

文献类型： 外文期刊

作者： Ju, Fuzhu 1 ; Wang, Jiahao 1 ; Xu, Ke 1 ; Xu, Qing 1 ; Liu, Xiaofeng 1 ; Tian, Tian 1 ; Du, Zaifeng 1 ; Wang, Jialin 1 ; Liao, Zhihua 2 ; Wang, Bingwu 3 ; Zhang, Hongbo 1 ;

作者机构： 1.Chinese Acad Agr Sci, Tobacco Res Inst, Key Lab Synthet Biol, Minist Agr & Rural Affairs, Qingdao 266101, Peoples R China

2.Southwest Univ, Sch Life Sci, SWU TAAHC Med Plant Joint R&D Ctr, Chongqing 400716, Peoples R China

3.Yunnan Acad Tobacco Agr Sci, Tobacco Breeding & Biotechnol Res Ctr, Kunming 650021, Peoples R China

关键词： Genome-wide analysis; Jasmonate; Microarray; Nicotiana; Nomenclature; TIFY/JAZ protein

期刊名称：PLANTA （ 影响因子：3.8； 五年影响因子：4.4 ）

ISSN： 0032-0935

年卷期： 2025 年 261 卷 5 期

页码：

收录情况： SCI

摘要： Main conclusionA systematic nomenclature for tobacco TIFY/JAZ proteins was established via genome-wide analysis, and the gene transcription patterns and potential functions of these proteins were analyzed as well. AbstractIntensive studies focused on the plant-specific JAZ regulators of jasmonate (JA) signaling in tobacco due to their critical roles in regulating JA-mediated development, secondary metabolism, and stress responses. JAZs comprise a subfamily of the TIFY proteins, yet the reported TIFY/JAZ regulators of tobacco spp. are tangled in naming confusion, which resulted in nomenclature chaos. Here, we identified 32 TIFY/JAZ proteins via genome-wide analysis of tobacco cultivar TN90 and obtained their homologues in Nicotiana sylvestris and Nicotiana tomentosiformis. By bioinformatic analysis, these TIFY/JAZ regulators were classified into 4 subfamilies (i.e., 21 JAZs, 5 ZIM & ZMLs, 2 TIFY8s, and 4 PPDs) based on their phylogenetic relationship to establish a systematic nomenclature, which indicated gene loss or genomic rearrangement during the formation of common tobacco. Analysis of JA-induced expression revealed that these TIFY/JAZ genes displayed distinct expression patterns in the leaves and roots upon JA treatment. Further microarray and metabolomics assays observed that 5 TIFY/JAZ genes were differentially expressed in the plants with dysfunction of COI1, the receptor protein of JA hormone and that the abundance of a series of primary and secondary metabolites was altered as well. A predicted protein interaction network of tobacco TIFY/JAZ proteins was also constructed, and it indicated that 120 proteins may interact with these regulators. Findings of this work provide valuable information about TIFY/JAZ proteins in regulating JA responses and metabolic processes in tobacco and may contribute greatly to future studies on tobacco TIFY/JAZ proteins.

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