您好，欢迎访问中国农业科学院 机构知识库！

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Homology-based analysis of the GRAS gene family in tobacco

文献类型： 外文期刊

作者： Chen, Y. Q. 1 ; Tai, S. S. 3 ; Wang, D. W. 1 ; Ding, A. M. 1 ; Sun, T. T. 1 ; Wang, W. F. 1 ; Sun, Y. H. 1 ;

作者机构： 1.Chinese Acad Agr Sci, Tobacco Res Inst, Key Lab Tobacco Gene Resources, Qingdao, Peoples R China

2.Chinese Acad Agr Sci, Grad Sch, Beijing 100193, Peoples R China

3.BGI Shenzhen, Shenzhen, Peoples R China

关键词： GRAS gene family;Gene structure;Protein motif analysis;Phylogenetic analysis;Gene expression pattern analysis;Tobacco

期刊名称：GENETICS AND MOLECULAR RESEARCH （ 影响因子：0.764； 五年影响因子：0.912 ）

ISSN： 1676-5680

年卷期： 2015 年 14 卷 4 期

页码：

收录情况： SCI

摘要： Members of the GRAS gene family are important transcriptional regulators. In this study, 21 GRAS genes were identified from tobacco, and were classified into eight subgroups according to the classification of Arabidopsis thaliana. Here, we provide a preliminary overview of this gene family in tobacco, describing the gene structure, gene expression, protein motif organization, phylogenetic analysis, and comparative analysis in tobacco, Arabidopsis, and rice. Using the sequences of 21 GRAS genes in Arabidopsis to search against the American tobacco genome database, 21 homologous GRAS genes in tobacco were identified. Sequence analysis indicates that these GRAS proteins have five conserved domains, which is consistent with their counterparts in other plants. Phylogenetic analyses divided the GRAS gene family into eight subgroups, each of which has distinct conserved domains and biological functions. Furthermore, the expression pattern of these 21 GRAS genes reveals that most arc expressed in all six tissues studied; however, some have tissue specificity. Taken together, this comprehensive analysis will provide a rich resource to assist in the study of GRAS protein functions in tobacco.

  • 相关文献

[1]Genome-wide analysis of TCP family in tobacco. Chen, L.,Ding, A. M.,Chen, H.,Xia, F.,Wang, W. F.,Sun, Y. H.,Chen, L.,Chen, H.,Xia, F.,Wang, W. F.,Chen, Y. Q.. 2016

[2]Genome-wide identification of the expansin gene family in tobacco (Nicotiana tabacum). Ding, Anming,Marowa, Prince,Kong, Yingzhen.

[3]烟草根际解钾茵的筛选与鉴定. 刘璇,孔凡玉,张成省,王静,冯超,赵杰. 2012

[4]Soil microbial diversity of an artificial Caragana korshinskii plantation on the loess plateau of China. W. Zhang,H.L. Wei,H.W. Gao,Y.G. Hu. 2005

[5]Detection of hepatitis E virus in pigs from slaughterhouses in Shanghai of China. Wen Zhang,Ga Gong,Xiuguo Hua,Quan Shen,Hong yin,Li Cui. 2011

[6]中国大陆H9N2亚型禽流感病毒遗传演化关系的研究. 李曦. 2002

[7]Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development. Weijie Li,Haihong Shang,Qun Ge,Changsong Zou,Juan Cai,Daojie Wang,Senmiao Fan,Zhen Zhang,Xiaoying Deng,Yunna Tan,Weiwu Song,Pengtao Li,Palanga Kibalou Koffi,Muhammad Jamshed,Quanwei Lu,Wankui Gong,Junwen Li,Yuzhen Shi,Tingting Chen,Juwu Gong,Aiying Liu,Youlu Yuan. 2016

[8]Glutathione S-transferases from the larval gut of the silkworm Bombyx mori: cDNA cloning, gene structure, expression and distribution. Gui, Zhong Zheng,Kim, Bo Yeon,Lee, Kwang Sik,Wei, Ya Dong,Sohn, Hung Dae,Jin, Byung Rae,Gui, Zhong Zheng,Wei, Ya Dong,Guo, Xijie. 2008

[9]Duplication and Divergence of Leucine-Rich Repeat Receptor-Like Protein Kinase (LRR-RLK) Genes in Basal Angiosperm Amborella trichopoda. Liu, Ping-Li,Mao, Jian-Feng,Liu, Hui,Gao, Shu-Min,Shi, Peng-Hao,Gong, Jun-Qing,Xie, Lu-Lu,Li, Peng-Wei. 2016

[10]Gene structure and expression characteristic of a novel odorant receptor gene cluster in the parasitoid wasp Microplitis mediator (Hymenoptera: Braconidae). Shan, S.,Zheng, Y.,Peng, Y.,Yang, Y. -Q.,Zhang, Y. -J.,Guo, Y. -Y.,Shan, S.,Zheng, Y.,Yang, Y. -Q.,Li, R. -J.,Lu, Z. -Y..

[11]Functions of the ERF transcription factor family in plants. Xu, Zhao-Shi,Chen, Ming,Li, Lian-Cheng,Ma, You-Zhi.

[12]Characterization and Comparative Analysis of Olfactory Receptor Co-Receptor Orco Orthologs Among Five Mirid Bug Species. Wang, Qian,Zhou, Yan-Le,Shan, Shuang,Cui, Huan-Huan,Xiao, Yong,Dong, Kun,Khashaveh, Adel,Zhang, Yong-Jun,Wang, Qian,Zhou, Yan-Le,Sun, Liang. 2018

[13]Research progress on surface antigen 1 (SAG1) of Toxoplasma gondii. Wang, Yanhua,Yin, Hong. 2014

[14]Cloning and Characterization of Genes Coding for Fructan Biosynthesis Enzymes (FBEs) in Triticeae Plants. Gao Xiang,She Mao-yun,Yin Gui-xiang,Qiao Wei-hua,Du Li-pu,Ye Xing-guo,Yu Yang. 2010

[15]The wheat omega-gliadin genes: structure and EST analysis. Anderson, Olin D.,Gu, Yong Q.,Lazo, Gerard R.,Wu, Jiajie,Kong, Xiuying,Wu, Jiajie,Wu, Jiajie. 2009

[16]Isolation and Characterization of an ERF Transcription Factor Gene from Cotton (Gossypium barbadense L.). Xianpeng Meng,Fuguang Li,Chuanliang Liu,Chaojun Zhang,Zhixia Wu,Yajuan Chen.

[17]Expression of rabbit defensin NP-1 gene in transgenic tobacco plants and its activity against bacterial wilt. Peng, YF,Cao, GC,Ma, JS,Chen, CX,Zhang, LM,Li, WB,Sun, YR. 1998

[18]The detection of QTLs controlling bacterial wilt resistance in tobacco (N-tabacum L.). Qian, Yi-liang,Yao, Da-nian,Qian, Yi-liang,Zu, Chao-long,Gao, Zheng-liang,Sun, Xue-yong,Wang, Xin-sheng,Wang, Da-zhou,Zhang, Hong-jun,Zhang, Hong-jun,Wang, Zhi-yong. 2013

[19]ATP-Citrate Lyase Gene (SoACLA-1), a Novel ACLA Gene in Sugarcane, and Its Overexpression Enhance Drought Tolerance of Transgenic Tobacco. Li, Jian,Sun, Bo,Liu, Jia-Yi,Zhao, Wen-Hui,Huang, Chan,Yang, Li-Tao,Li, Yang-Rui,Yang, Li-Tao,Li, Yang-Rui. 2017

[20]Plasma membrane NADPH oxidase in tobacco-tobacco mosaic virus interaction. Zhang, HM,Chen, J. 1999

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：中国农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台