Reticulate allopolyploidy and subsequent dysploidy drive evolution and diversification in the cotton family
文献类型： 外文期刊
作者： Zhang, Ren-Gang 1 ; Zhao, Hang 3 ; Conover, Justin L. 5 ; Shang, Hong-Yun 1 ; Liu, De-Tuan 1 ; Zhou, Min-Jie 1 ; Liu, Xiong-Fang 1 ; Jia, Kai-Hua 7 ; Shao, Shi-Cheng 8 ; Li, Meng-Meng 3 ; Jin, Chong-Yang 3 ; Liu, Yi-Hui 4 ; Shen, Xiao-Yi 3 ; Li, Da-Wei 9 ; Lysak, Martin A. 10 ; Wendel, Jonathan F. 12 ; Ge, Xiao-Yang 3 ; Ma, Yong-Peng 1 ;
作者机构： 1.Chinese Acad Sci, Kunming Inst Bot, Yunnan Key Lab Integrat Conservat Plant Species Ex, State Key Lab Plant Divers & Specialty Crops, Kunming 650201, Peoples R China
2.Univ Chinese Acad Sci, Beijing 101408, Peoples R China
3.Chinese Acad Agr Sci, Inst Cotton Res, State Key Lab Cotton Biol, Anyang 455000, Peoples R China
4.Qufu Normal Univ, Coll Life Sci, Qufu 273165, Peoples R China
5.Univ Arizona, Ecol & Evolutionary Biol Dept, Mol & Cellular Biol Dept, Tucson, AZ 85718 USA
6.Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA
7.Shandong Acad Agr Sci, Inst Crop Germplasm Resources, Jinan 250100, Peoples R China
8.Chinese Acad Sci, CAS Key Lab Trop Forest Ecol, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China
9.Chinese Acad Sci, Wuhan Bot Garden, Wuhan 430074, Peoples R China
10.Masaryk Univ, CEITEC Cent European Inst Technol, Fac Sci, CZ-62500 Brno, Czech Republic
11.Masaryk Univ, Fac Sci, Dept Expt Bot, CZ-62500 Brno, Czech Republic
12.Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Amees, IA 50011 USA
期刊名称：NATURE COMMUNICATIONS （ 影响因子：15.7； 五年影响因子：17.2 ）
ISSN：
年卷期： 2025 年 16 卷 1 期
页码：
收录情况： SCI
摘要： Polyploidy and subsequent post-polyploid diploidization (PPD) are key drivers of plant genome evolution, yet their contributions to evolutionary success remain debated. Here, we analyze the Malvaceae family as an exemplary system for elucidating the evolutionary role of polyploidy and PPD in angiosperms, leveraging 11 high-quality chromosome-scale genomes from all nine subfamilies, including newly sequenced, near telomere-to-telomere assemblies from four of these subfamilies. Our findings reveal a complex reticulate paleoallopolyploidy history early in the diversification of the Malvadendrina clade, characterized by multiple rounds of species radiation punctuated by ancient allotetraploidization (Mal-beta) and allodecaploidization (Mal-alpha) events around the Cretaceous-Paleogene (K-Pg) boundary. We further reconstruct the evolutionary dynamics of PPD and find a strong correlation between dysploidy rate and taxonomic richness of the paleopolyploid subfamilies (R-2 >= 0.90, P < 1e-4), supporting the "polyploidy for survival and PPD for success" hypothesis. Overall, our study provides a comprehensive reconstruction of the evolutionary history of the Malvaceae and underscores the crucial role of polyploidy-dysploidy waves in shaping plant biodiversity.
- 相关文献
作者其他论文 更多>>
-
Evolutionary dynamics of mitochondrial genomes and intracellular transfers among diploid and allopolyploid cotton species
作者：Kong, Jiali;Wang, Jie;Nie, Liyun;Wu, Zhiqiang;Kong, Jiali;Zou, Changsong;Wu, Zhiqiang;Kong, Jiali;Wang, Jie;Nie, Liyun;Tembrock, Luke R.;Kan, Shenglong;Ma, Xiongfeng;Wendel, Jonathan F.
关键词：Cotton; Mitochondrial genome; Plastid genome; Alternative conformation; Evolutionary rate variation; Intracellular transfer
-
Largest genome assembly in Brassicaceae: retrotransposon-driven genome expansion and karyotype evolution in Matthiola incana
作者：Chen, Daozong;Chen, Haidong;Wan, Shubei;Lu, Zhanjun;Tan, Chen;Yang, Taihua;Zhang, Xiaohan;Huang, Fan;Liu, Chao;Ge, Xianhong;Yang, Taihua;Lei, Yong;Jiang, Huifang;Liao, Boshou;King, Graham J.;Lysak, Martin A.;Lysak, Martin A.
关键词：genome assembly; genome obesity; Lineage III; Hesperodae; Cruciferae; retrotransposons
-
Verticillium dahliae effector Vd06254 disrupts cotton defence response by interfering with GhMYC3-GhCCD8-mediated hormonal crosstalk between jasmonic acid and strigolactones
作者：Ma, Jianhui;Jiang, Fan;Yu, Yan;Zhou, Haodan;Zhan, Jingjing;Li, Jianing;Chen, Yanli;Wang, Ye;Duan, Hongying;Ge, Xiaoyang;Zhao, Hang;Liu, Lisen;Zhou, Haodan;Zhan, Jingjing;Li, Jianing;Chen, Yanli;Wang, Ye;Ge, Xiaoyang;Zhao, Hang;Liu, Lisen;Xu, Zhenzhen;Zhao, Hang
关键词：
Verticillium dahliae ; Effector; host-pathogen interaction; cotton; transcription factor -
Centromere-size reduction and chromatin state dynamics following intergenomic hybridization in cotton
作者：Han, Jinlei;Dai, Yan;Zhang, Xin;Tian, Jingjing;Zhou, Jialiang;Xu, Xinqi;Chen, Qi;Kou, Xiaobing;Xu, Lei;Wu, Xinyu;Sun, Ziying;Geng, Jiahui;Li, Lin;Qiu, Chenyu;Mehari, Teame Gereziher;Wang, Baohua;Zhang, Hui;Wang, Kai;Hu, Guanjing;Wendel, Jonathan F.;Hu, Guanjing;Shen, Xinlian;Xu, Zhenzhen
关键词：
-
A high-resolution model of gene expression during Gossypium hirsutum (cotton) fiber development
作者：Grover, Corrinne E.;Jareczek, Josef J.;Leach, Alexis G.;Miller, Emma R.;Wendel, Jonathan F.;Jareczek, Josef J.;Swaminathan, Sivakumar;Zabotina, Olga A.;Lee, Youngwoo;Howell, Alexander H.;Rani, Heena;Mallery, Eileen L.;Szymanski, Daniel B.;Rani, Heena;Arick, Mark A.;Peterson, Daniel G.;Leach, Alexis G.;Yang, Pengcheng;Xie, Jun;Hu, Guanjing;Xiong, Xianpeng;Hu, Guanjing;Xiong, Xianpeng;Haigler, Candace H.;Haigler, Candace H.
关键词：Cotton fiber; Fiber development; Cellulose synthase; Developmental transcriptomics; Turgor
-
Genomic and genetic insights into Mendel's pea genes
作者：Feng, Cong;Chen, Baizhi;Shi, Yan;Jiang, Mei;Song, Bo;Cheng, Hong;Lu, Lu;Wang, Luyao;Zhang, Cuijun;Zhao, Hang;Hou, Junliang;Li, Pengfeng;Yuan, Quan;Wu, Tian;Zhao, Xiaoxiao;Li, Xiuli;Sun, Yuchen;Huang, Zejian;Wu, Zhen;Cheng, Shifeng;Hofer, Julie;Howard, Alex;Moreau, Carol;Sawada, Chie;Vikeli, Eleni;Tsanakas, Georgios;Cheema, Jitender;Barclay, J. Elaine;Sayers, Liz;Wingen, Luzie;Vigouroux, Marielle;Vickers, Martin;Ambrose, Mike;Higuera-Poveda, Paola;Spanner, Rebecca;Horler, Richard;Wouters, Roland;Chundakkad, Smitha;Steuernagel, Burkhard;Domoney, Claire;Ellis, Noel;Chayut, Noam;Bendahmane, Abdel;Fouchal, Anissa;Dalmais, Marion;Moreau, Carol;LeSignor, Christine;Cheema, Jitender;Spanner, Rebecca;Deng, Xing Wang;Deng, Xing Wang
关键词：
-
The GhWL1-GhH1-GhGA2OX1 Transcriptional Module Regulates Cotton Leaf Morphology
作者：Zhan, Jingjing;Wang, Ye;Zhao, Hang;Chu, Yu;Wang, Peng;Chen, Yanli;Wei, Xi;Qin, Wenqiang;Liu, Menghan;Li, Fuguang;Ge, Xiaoyang;Zhang, Xiaoshuang;Zhao, Hang;Kong, Jie
关键词：cotton; GhH1; GhWL1; leaf morphology; T-DNA mutant
