Insight into the evolutionary and domesticated history of the most widely cultivated mushroom Agaricus bisporus via mitogenome sequences of 361 global strains
文献类型： 外文期刊
作者： Zhang, Ming-Zhe 1 ; Xu, Jian-Ping 3 ; Callac, Philippe 4 ; Chen, Mei-Yuan 5 ; Wu, Qi 1 ; Wach, Mark 6 ; Mata, Gerardo 7 ; Zhao, Rui-Lin 1 ;
作者机构： 1.Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, 3 1St Beichen West Rd, Beijing 100101, Peoples R China
2.Univ Chinese Acad Sci, Coll Life Sci, Beijing 101408, Peoples R China
3.McMaster Univ, Dept Biol, Hamilton, ON, Canada
4.INRAE, MycSA, CS 20032, F-33882 Villenave Dornon, France
5.Fujian Acad Agr Sci, Edible Fungi Inst, Fuzhou 350014, Peoples R China
6.Sylvan BioSci, Kittanning, PA 16201 USA
7.Inst Ecol AC, Carretera Antigua Coatepec 351, Xalap 91073, Mexico
关键词： Population genomics; Phylogenomic; Mitogenome; Domestication; Button mushroom
期刊名称：BMC GENOMICS （ 影响因子：4.4； 五年影响因子：4.7 ）
ISSN： 1471-2164
年卷期： 2023 年 24 卷 1 期
页码：
收录情况： SCI
摘要： Agaricus bisporus is the most widely cultivated edible mushroom in the world with a only around three hundred years known history of cultivation. Therefore, it represents an ideal organism not only to investigate the natural evolutionary history but also the understanding on the evolution going back to the early era of domestication. In this study, we generated the mitochondrial genome sequences of 352 A. bisporus strains and 9 strains from 4 closely related species around the world. The population mitogenomic study revealed all A. bisporus strains can be divided into seven clades, and all domesticated cultivars present only in two of those clades. The molecular dating analysis showed this species origin in Europe on 4.6 Ma and we proposed the main dispersal routes. The detailed mitogenome structure studies showed that the insertion of the plasmid-derived dpo gene caused a long fragment (MIR) inversion, and the distributions of the fragments of dpo gene were strictly in correspondence with these seven clades. Our studies also showed A. bisporus population contains 30 intron distribution patterns (IDPs), while all cultivars contain only two IDPs, which clearly exhibit intron loss compared to the others. Either the loss occurred before or after domestication, that could suggest that the change facilitates their adaptation to the cultivated environment.
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