Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.)
文献类型： 外文期刊
作者： Wu, Liang 1 ; Lin, Haidong 1 ; Zhang, Lijun 1 ; Kiet, Ta Quang 1 ; Liu, Peng 1 ; Song, Jinkang 1 ; Duan, Yong 1 ; Hu, Chunyu 1 ; Yang, Hao 1 ; Duan, Weixing 3 ; Yang, Xiping 1 ;
作者机构： 1.Guangxi Univ, State Key Lab Conservat & Utilizat Subtrop Agrobio, Nanning 530005, Peoples R China
2.Natl Key Lab Biol Breeding Trop Crops, Kunming 650221, Peoples R China
3.Chinese Acad Agr Sci, Guangxi Key Lab Sugarcane Genet Improvement, Guangxi Acad Agr Sci, Sugarcane Res Inst,Sugarcane Res Ctr,Minist Agr &, Nanning 530007, Guangxi, Peoples R China
期刊名称：SCIENTIFIC DATA （ 影响因子：9.8； 五年影响因子：10.8 ）
ISSN：
年卷期： 2024 年 11 卷 1 期
页码：
收录情况： SCI
摘要： Microbes living inside or around sugarcane (Saccharum spp.) are crucial for their resistance to abiotic and biotic stress, growth, and development. Sequences of microbial genomes and genes are helpful to understand the function of these microbes. However, there is currently a lack of such knowledge in sugarcane. Here, we combined Nanopore and Illumina sequencing technologies to successfully construct the first high-quality metagenome-assembled genomes (MAGs) and gene catalogues of sugarcane culturable microbes (GCSCMs), which contained 175 species-level genome bins (SGBs), and 7,771,501 non-redundant genes. The SGBs included 79 novel culturable bacteria genomes, and 3 bacterial genomes with nitrogen-fixing gene clusters. Four single scaffold near-complete circular MAGs (cMAGs) with 0% contamination were obtained from Nanopore sequencing data. In conclusion, we have filled a research gap in the genomes and gene catalogues of culturable microbes of sugarcane, providing a vital data resource for further understanding the genetic basis and functions of these microbes. In addition, our methodology and results can provide guidance and reference for other plant microbial genome and gene catalogue studies.
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