Genome-wide association study reveals the genetic basis of vitamin C content in rapeseed (Brassica napus L.) seedlings
文献类型: 外文期刊
作者: Wang, Chao 1 ; Kuang, Lieqiong 1 ; Tian, Ze 1 ; Wang, Xinfa 1 ; Wang, Hanzhong 1 ; Dun, Xiaoling 1 ;
作者机构: 1.Chinese Acad Agr Sci, Key Lab Biol & Genet Improvement Oil Crops, Minist Agr & Rural Affairs, Oil Crops Res Inst, Wuhan, Peoples R China
2.Hubei Hongshan Lab, Wuhan, Peoples R China
关键词: rapeseed seedlings; vitamin C; GWAS; candidate genes; germplasm resource
期刊名称:FRONTIERS IN PLANT SCIENCE ( 影响因子:4.8; 五年影响因子:5.7 )
ISSN: 1664-462X
年卷期: 2025 年 16 卷
页码:
收录情况: SCI
摘要: Rapeseed (Brassica napus L.) is a versatile crop, with its seedlings and flowering stalks can be utilized as vegetables, which are rich in vitamin C (Vc) and other essential nutrients, including selenium, calcium, zinc, and various amino acids. Despite the well-documented health benefits of Vc as a critical antioxidant nutrient, the genetic mechanisms governing Vc accumulation in rapeseed remain poorly understood. In this study, we investigated the Vc content of 327 rapeseed accessions during the seedling stage across six environments in Hubei province over three consecutive years (2018-2020). The Vc content in these environments ranged from 62.82 to 161.25 mg/100g, demonstrating high genetic variation (7.96% to 9.43%) and heritability (86.11%). Genome-wide association studies (GWAS) identified 31 significant single nucleotide polymorphisms (SNPs) across various chromosomes, which explained 5.68% to 12.78% of the phenotypic variation, integrated into 16 quantitative trait loci (QTLs). Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analyses of the 2365 annotated genes near associated SNPs revealed significant involvement in diverse metabolic pathways including peroxisome, ascorbate, secondary metabolites, and terpenoid biosynthesis, as well as biological processes such as hydrogen peroxide/lactate metabolism and ROS biosynthesis, along with associations with specific cellular components and molecular functions. Furthermore, we identified six candidate genes that exhibit significant differences in expression between low and high Vc accessions, which are potentially involved in Vc biosynthesis but require further experimental validation. Additionally, we selected four superior germplasms (8S079, 8S200, 8S242, and 8S243) that demonstrate extreme Vc content, providing valuable germplasm resources for breeding. Collectively, these findings provide novel and comprehensive insights into the genetic and molecular mechanisms regulating Vc accumulation in rapeseed, thereby establishing a foundation for targeted genetic improvement of nutritional quality in vegetable rapeseed varieties.
- 相关文献
作者其他论文 更多>>
-
Oocytes maintain low ROS levels to support the dormancy of primordial follicles
作者:Qin, Shaogang;Chi, Xinyue;Zhu, Zijian;Gao, Meng;Zhao, Ting;Zhang, Jingwen;Zheng, Wenying;Chen, Ziqi;Zhou, Bo;Xia, Guoliang;Wang, Chao;Chen, Chuanhe;Zhang, Tuo;He, Meina;Zhang, Lifan;Wang, Wenji
关键词:ferroptosis; primary ovarian insufficiency; primordial follicle; ROS; SOD1
-
Genome-Wide Silencer Screening Reveals Key Silencer Modulating Reprogramming Efficiency in Mouse Induced Pluripotent Stem Cells
作者:Zhu, Xiusheng;Huang, Lei;Li, Guoli;Deng, Biao;Wang, Xiaoxiao;Yang, Hu;Zhang, Yuanyuan;Wen, Qiuhan;Wang, Chao;Zhang, Jingshu;Li, Kui;Liu, Yuwen;Deng, Biao;Deng, Biao;Zhao, Yunxiang
关键词:
cis -regulatory elements; high-throughput; iPSCs; silencer; Ss-STARR-seq -
Development and Validation of Multi-Locus GWAS-Based KASP Markers for Maize Ustilago maydis Resistance
作者:Shen, Tao;Gao, Huawei;Zhu, Liying;Zhao, Yongfeng;Guo, Jinjie;Wang, Chao;Zheng, Yunxiao;Song, Weibin;Hou, Peng;Song, Wei
关键词:corn smut; disease index; candidate genes; haplotype combinations; marker-assisted selection
-
DPImpute: A Genotype Imputation Framework for Ultra-Low Coverage Whole-Genome Sequencing and its Application in Genomic Selection
作者:Zheng, Weigang;Wang, Chao;Dong, Wenjun;Liu, Yuwen;Zheng, Weigang;Wang, Chao;Dong, Wenjun;Liu, Yuwen;Zheng, Weigang;Ma, Wenlong;Chen, Zhilong;Wang, Chao;Sun, Tao;Dong, Wenjun;Zhang, Song;Tang, Zhonglin;Li, Kui;Liu, Yuwen;Zheng, Weigang;Ma, Wenlong;Chen, Zhilong;Wang, Chao;Sun, Tao;Dong, Wenjun;Zhang, Song;Tang, Zhonglin;Li, Kui;Liu, Yuwen;Zhang, Wenjing;Tang, Zhonglin;Liu, Yuwen;Zhao, Yunxiang
关键词:breeding models; genetic screening of embryos; genomic selection; genotype imputation; single cell genotype
-
Uncovering the whole genome silencers of human cells via Ss-STARR-seq
作者:Zhu, Xiusheng;Huang, Lei;Wang, Chao;Li, Guoli;Deng, Biao;Kong, Dashuai;Wang, Xiaoxiao;Chang, Rongrong;Gu, Yi;Wen, Qiuhan;Kong, Siyuan;Liu, Yuwen;Zhang, Yubo;Chang, Rongrong
关键词:
-
A Feature Engineering Method for Whole-Genome DNA Sequence with Nucleotide Resolution
作者:Wang, Ting;Cui, Yunpeng;Sun, Tan;Li, Huan;Hou, Ying;Wang, Mo;Chen, Li;Wu, Jinming;Wang, Ting;Cui, Yunpeng;Sun, Tan;Li, Huan;Hou, Ying;Wang, Mo;Chen, Li;Wu, Jinming;Wang, Chao
关键词:feature construction; genetic selection; Omics analysis; large language model; agronomic trait prediction
-
Multi-omics analysis reveals critical cis-regulatory roles of transposable elements in livestock genomes
作者:Wang, Chao;Lei, Bowen;Bao, Yongzhou;Wang, Zhen;Chen, Choulin;Zhang, Yuanyuan;Qin, Shenghua;Sun, Tao;Tang, Zhonglin;Liu, Yuwen;Wang, Chao;Lei, Bowen;Chen, Choulin;Sun, Tao;Tang, Zhonglin;Liu, Yuwen;Wang, Chao;Lei, Bowen;Chen, Choulin;Sun, Tao;Tang, Zhonglin;Liu, Yuwen;Wang, Chao;Lei, Bowen;Bao, Yongzhou;Zhang, Yuanyuan;Sun, Tao;Tang, Zhonglin;Liu, Yuwen;Bao, Yongzhou;Wang, Zhen;Zhang, Yuanyuan;Bao, Yongzhou;Wang, Zhen;Tang, Zhonglin;Liu, Yuwen
关键词:Highlights; Animals; Genomic analysis; Molecular



