文献类型： 外文期刊

作者： Budi, Trifan ¹ ; Singchat, Worapong ¹ ; Tanglertpaibul, Nivit ¹ ; Wongloet, Wongsathit ¹ ; Chaiyes, Aingorn ⁴ ; Ariyaraphong, Nattakan ¹ ; Thienpreecha, Worawit ¹ ; Wannakan, Wannapa ¹ ; Mungmee, Autchariyapron ¹ ; Thong, Thanyapat ¹ ; Wattanadilokchatkun, Pish ¹ ; Panthum, Thitipong ¹ ; Ahmad, Syed Farhan ¹ ; Lisachov, Artem ¹ ; Muangmai, Narongrit ¹ ; Chuenka, Rattanaphon ⁷ ; Prapattong, Pollavat ⁸ ; Nunome, Mitsuo ⁹ ; Chamchumroon, Wiyada ¹⁰ ; Han, Kyudong ¹ ; Pornpipatsiri, Santi ¹³ ; Supnithi, Thepchai ¹⁴ ; Peng, Min-Sheng ¹⁵ ; Han, Jian-Lin ¹⁷ ; Matsuda, Yoichi ¹ ; Duengkae, Prateep ¹ ; Noinafai, Phuechphol ¹³ ; Srikulnath, Kornsorn ¹ ;

作者机构： 1.Kasetsart Univ, Fac Sci, Anim Genom & Bioresource Res Unit AGB Res Unit, 50 Ngamwongwan, Bangkok 10900, Thailand

2.Kasetsart Univ, Fac Sci, Interdisciplinary Grad Program Biosci, 50 Ngamwongwan, Bangkok 10900, Thailand

3.Kasetsart Univ, Fac Forestry, Dept Forest Biol, Special Res Unit Wildlife Genom SRUWG, 50 Ngamwongwan, Bangkok 10900, Thailand

4.Sukhothai Thammathirat Open Univ, Sch Agr & Cooperat, Pakkret Nonthaburi 11120, Thailand

5.Kasetsart Univ, Fac Sci, Dept Genet, Lab Anim Cytogenet & Comparat Genom ACCG, 50 Ngamwongwan, Bangkok 10900, Thailand

6.Kasetsart Univ, Fac Fisheries, Dept Fishery Biol, Bangkok 10900, Thailand

7.Kasetsart Univ, Fac Humanities, Bangkok 10900, Thailand

8.Mae Fah Luang Univ, Mekong Subreg Arts & Culture Res Unit MAC MFU, Chiang Rai 57100, Thailand

9.Okayama Univ Sci, Fac Sci, Dept Zool, Ridai Cho 1-1,Kita Ku, Okayama 7000005, Japan

10.Minist Nat Resources & Environm, Dept Natl Pk Wildlife & Plant Conservat, Bangkok 10900, Thailand

11.Dankook Univ, Dept Microbiol, Cheonan 31116, South Korea

12.Dankook Univ, Biomed Engn Core Facil Res Ctr, Cheonan 31116, South Korea

13.Minist Agr & Cooperat, Dept Livestock Dev, Chiang Rai Prov Livestock Off, Chiang Rai 57000, Thailand

14.Natl Elect & Comp Technol Ctr NECTEC, Khlong Luang 12120, Thailand

15.Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Yunnan Lab Mol Biol Domest Anim, Kunming 650223, Peoples R China

16.Univ Chinese Acad Sci, Beijing 100049, Peoples R China

17.Chinese Acad Agr Sci CAAS, Inst Anim Sci, CAAS ILRI Joint Lab Livestock & Forage Genet Resou, Beijing 100081, Peoples R China

18.Ctr Excellence Agr Biotechnol AG BIO PERDO CHE, Bangkok 10900, Thailand

19.Kasetsart Univ, Natl Res Univ Kasetsart Univ, Ctr Adv Studies Trop Nat Resources, Bangkok 10900, Thailand

关键词： black-boned chicken; gene pool; haplotype; habitat suitability; genetic diversity

期刊名称：SUSTAINABILITY （ 影响因子：3.9； 五年影响因子：4.0 ）

ISSN：

年卷期： 2023 年 15 卷 8 期

页码：

收录情况： SCI

摘要： Knowledge of the genetic characteristics, origin, and local adaptation of chickens is essential to identify the traits required for chicken breeding programs. Chee Fah and Fah Luang are black-boned chicken breeds reared in Chiang Rai, Thailand. Chickens are an important part of the local economy and socio-culture; however, the genetic diversity, characteristics, and origins of these two breeds have been poorly studied. Here, we investigated the genetic diversity, gene pool, and origin of the Chee Fah and Fah Luang chickens using mitochondrial DNA D-loop (mtDNA D-loop) sequencing and microsatellite genotyping, as well as habitat suitability analysis using maximum entropy modeling. The MtDNA D-loop sequencing and microsatellite genotype analyses indicated that the Chee Fah and Fah Luang chickens shared haplogroups A, B, and CD with Chinese black-boned chickens. Gene pool analysis revealed that the Chee Fah and Fah Luang chickens have distinct genetic patterns compared to Thai domestic chickens and red junglefowl. Some gene pools of red junglefowl and other Thai domestic chickens were observed within the Chee Fah and Fah Luang chicken gene pool structures, suggesting genetic exchange. The data indicate that the Chee Fah and Fah Luang chickens originated from Chinese indigenous black-boned chicken breeds and experienced crossbreeding/hybridization and introgression with red junglefowl and other domestic breeds during domestication. Interestingly, the Chee Fah and Fah Luang chickens from Chiang Rai shared the same allelic gene pool, which was not shared with the Chee Fah and Fah Luang chickens from Mae Hong Son, suggesting at least two gene pool origins in the Chee Fah and Fah Luang chicken populations. Alternatively, different gene pools in the Chee Fah and Fah Luang chickens from different localities might be caused by differences in environmental factors, especially elevation.