文献类型： 外文期刊
作者： Ashari, Hidayat 1 ; Liu, Li-Sheng 4 ; Dagong, Muhammad Ihsan Andi 7 ; Cai, Zheng-Fei 4 ; Xie, Guo-Li 4 ; Yin, Ting-Ting 4 ; Zhang, Ya-Ping 4 ; Han, Jian-Lin 1 ; Peng, Min-Sheng 4 ;
作者机构： 1.Chinese Acad Agr Sci, Inst Anim Sci, CAAS ILRI Joint Lab Livestock & Forage Genet Resou, Beijing, Peoples R China
2.Chinese Acad Agr Sci CAAS, Grad Sch, Beijing, Peoples R China
3.Natl Res & Innovat Agcy BRIN, Res Ctr Biosystemat & Evolut, Bogor, Indonesia
4.Chinese Acad Sci, Kunming Inst Zool, Key Lab Genet Evolut & Anim Models, Kunming, Peoples R China
5.Chinese Acad Sci, Kunming Inst Zool, Yunnan Key Lab Mol Biol Domest Anim, Kunming, Peoples R China
6.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming, Peoples R China
7.Hasanuddin Univ, Fac Anim Sci, Anim Prod Dept, Makassar, Indonesia
8.Yunnan Univ, Sch Life Sci, State Key Lab Conservat & Utilizat Bioresources Yu, Kunming, Peoples R China
关键词： admixture; chicken; feralization; genome; red jungle fowl; structural variations
期刊名称：ANIMAL GENETICS （ 影响因子：2.1； 五年影响因子：2.5 ）
ISSN： 0268-9146
年卷期： 2025 年 56 卷 1 期
页码：
收录情况： SCI
摘要： The feralization of domestic chicken makes the conservation and management of red jungle fowl (Gallus gallus) more complicated and challenging. We collected two Sulawesi feral chickens, located east of the Wallace Line, for whole-genome sequencing and de novo genome assembly. Phylogenetic and f4-statistics analyses indicated that the Sulawesi feralized domestic chickens (G. g. domesticus) received gene flow from G. g. gallus. We integrated similar to 45x ultra-long Oxford Nanopore Technology reads and similar to 28x PacBio HiFi reads to generate a de novo genome assembly of a female Sulawesi feral chicken (GGsula) with a contig N50 of 19.88 Mbp. We characterized structural variations in GGsula, and found some were related to nervous system. Our study provides the first genome assembly of feral chickens, which is a unique genomic resource to explore the process of chicken domestication and feralization.
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