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Genome-wide identification and expression analysis of salinity stress-related protein kinase in cotton

文献类型： 外文期刊

作者： Rahman, Shafeeq Ur 1 ; Shehzad, Muhammad 2 ; Qin, Anzhen 3 ; Zain, Muhammad 4 ; Shahzad, Sher Muhammad 5 ; Ansari, Mohammad Javed 6 ; Alharbi, Sulaiman Ali 8 ;

作者机构： 1.Shenzhen Univ, Coll Chem & Environm Engn, Water Sci & Environm Engn Res Ctr, Shenzhen, Peoples R China

2.Chinese Acad Agr Sci, Inst Cotton Res, State Key Lab Cotton Biol, Anyang, Peoples R China

3.Chinese Acad Agr Sci, Inst Farmland Irrigat, Key Lab Crop Water Use & Regulat, Minist Agr & Rural Affairs, Xinxiang 453002, Peoples R China

4.Yangzhou Univ, Coll Agr, Key Lab Crop Genet & Physiol Jiangsu Prov, Yangzhou, Peoples R China

5.Univ Sargodha, Coll Agr, Dept Soil & Environm Sci, Sargodha, Punjab, Pakistan

6.Mahatma Jyotiba Phule Rohilkhand Univ Bareilly, Hindu Coll Moradabad, Dept Bot, Moradabad, India

7.Al Waili Fdn Sci, New York, NY USA

8.King Saud Univ, Coll Sci, Dept Bot & Microbiol, POB 2455, Riyadh, Saudi Arabia

期刊名称：AGRONOMY JOURNAL （ 影响因子：2.1； 五年影响因子：2.5 ）

ISSN： 0002-1962

年卷期： 2024 年 116 卷 3 期

页码：

收录情况： SCI

摘要： Salinity stress is a worldwide problem that damages crop growth and development. As a principal regulatory component in eukaryotic cells, protein kinase is key to regulating crop tolerance to salinity stress. However, it is still unclear about the responses of protein kinase to salinity stress across different upland cotton species in China. This study was conducted to evaluate the functional expression of protein kinase genes in three cotton species (Gossypium hirsutum, Gossypium raimondii, and Gossypium arboretum) under salinity stress. A total of 134 genes that encode the protein kinase were recognized in cotton species. The results indicated that 67 genes belonged to G. hirsutum, 34 genes belonged to G. arboretum, and 33 genes belonged to G. raimondii, respectively. Protein kinase genes were unequally distributed on the chromosomes of the three cotton species. Based on the syntenic analysis, 58 protein kinase genes were duplicated in G. hirsutum, G. raimondii, and G. arboretum. The results of synonymous (Ks), non-synonymous (Ka), and Ka/Ks values for orthologous genes showed that the top 10 G. hirsutum protein kinase genes were mostly expressed. Co-expression network analysis of protein kinase genes confirmed their function in improving crop tolerance to salinity stress for different cotton species. It was concluded that protein kinase genes were stress-inducible and were linked to stress-responsive miRNAs in cotton species. The findings can be used for breeding new salt-tolerant cotton varieties in China. Protein kinases upregulated the responses of cotton plants to salinity stress.A total of 134 genes that encode the protein kinase were recognized in cotton species.Most protein kinase genes made clusters on the lower part and upper part arms of chromosomes.Protein kinase subfamily genes exert a positive function in improving cotton's tolerance to salt stress.

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