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Comprehensive genome-wide identification and expression analysis of the EPF/EPFL gene family in oat

文献类型： 外文期刊

作者： Jiang, Qingxue 1 ; Ma, Lin 1 ; Guo, Siyuan 2 ; Zhou, Xinyue 1 ; Zhang, Zhipeng 1 ; Cui, Yanhong 1 ; Tang, Jun 1 ; Yi, Dengxia 1 ; Wang, Xuemin 1 ;

作者机构： 1.Chinese Acad Agr Sci, Inst Anim Sci, Beijing 100193, Peoples R China

2.McMaster Univ, Fac Sci, Hamilton, ON L8S 4L8, Canada

关键词： Avena sativa; EPF/EPFL; Drought stress; Salt stress; Expression analysis

期刊名称：BMC GENOMICS （ 影响因子：3.7； 五年影响因子：4.2 ）

ISSN： 1471-2164

年卷期： 2025 年 26 卷 1 期

页码：

收录情况： SCI

摘要： Epidermal pattern factor-like (EPF/EPFL) genes are a unique class of small, secreted peptides found in plants that play crucial roles in plant stress responses. A genome-wide analysis revealed 33 AsEPF/EPFL genes in oats (Avena sativa), with 28 containing the conserved EPF domain and 5 harbouring the stomagen domain. These proteins share 2-6 conserved motifs, reflecting functional modularity. The phylogenetic classification grouped these genes into five evolutionarily conserved clades containing both monocot and dicot homologues, indicating early divergence prior to monocot-dicot speciation. Expression profiling revealed distinct tissue-specific patterns: preferential expression in roots (12 genes), stems (6 genes), leaves (5 genes), and spikes (7 genes), with 3 genes showing dual peak expression in stems and leaves. Further analysis of gene expression under salt and drought stress revealed that AsEPF/EPFLs are induced by both types of stress, with different genes showing varying expression patterns under drought and salt stress. This study identified valuable candidate genes for high-yielding and stress-resistant oat breeding.

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