Interspecies Conservation of Gene Expression Patterns in Brassica Reproductive Organs Unveiled by Comparative Transcriptomics
文献类型： 外文期刊
作者： Chen, Haixu 1 ; Cai, Xu 2 ; Wu, Jian 2 ; Hou, Xilin 1 ; Wang, Xiaowu 2 ;
作者机构： 1.Nanjing Agr Univ, Coll Hort, Engn Res Ctr Germplasm Enhancement & Utilizat Hort, Minist Educ PR China,State Key Lab Crop Genet & Ge, Nanjing 210095, Peoples R China
2.Chinese Acad Agr Sci, Inst Vegetables & Flowers, State Key Lab Vegetable Biobreeding, Beijing 100081, Peoples R China
关键词： Brassica; comparative transcriptomics; subgenome; transcription factors (TFs)
期刊名称：HORTICULTURAE （ 影响因子：3.0； 五年影响因子：3.2 ）
ISSN：
年卷期： 2025 年 11 卷 4 期
页码：
收录情况： SCI
摘要： Brassica species evolved through recurrent polyploidization and chromosomal rearrangements, forming diploid progenitors that hybridize into allopolyploids. These plants exhibit remarkable morphological diversity, with specialized edible organs including leaf-, stem-, root-, and oil-type cultivars, yet cross-species multi-organ transcriptomic studies elucidating their gene expression similarities and divergences remain lacking. To address this gap, we analyzed publicly available transcriptomes (downloaded from NCBI SRA) from eight organs (embryo, seed coat, silique, root, stem, leaf, flower and seedling) across six U's Triangle species (Brassica rapa, B. nigra, B. oleracea, B. juncea, B. napus, B. carinata), revealing that (1) reproductive organs show higher gene expression conservation (GEC), particularly embryos (p < 0.05); (2) lineage-specific subgenome dominance patterns (BnaC/BjuB/BcaC) persist across organs; and (3) ancestral subgenomes functionally specialize, with MF2-subgenome transcription factors (YABBY/GRF) regulating embryogenesis and LF/MF1-subgenome MYBs controlling seed coat development. Comparative analyses demonstrate floral GEC exceeds that of the Arabidopsis thaliana homologs, while also exhibiting seed-specific divergence patterns. This study establishes a comprehensive Brassica multispecies expression atlas, elucidating organ-specific evolutionary conservation principles and providing molecular insights into subgenome functional partitioning, which offers valuable perspectives for understanding Brassica evolutionary mechanisms and crop improvement strategies.
- 相关文献
作者其他论文 更多>>
-
Rapid introgression of the clubroot resistance gene CRa into cabbage skeleton inbred lines through marker assisted selection
作者：Zhang, Na;Zhu, Mingzhao;Qiu, Yuting;Fang, Zhiyuan;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao;Ji, Jialei;Yang, Limei;Wang, Yong;Zhu, Mingzhao;Hou, Xilin
关键词：Clubroot; Breeding; Backcross; Marker assisted selection
-
Chromosome-level genome assembly of Z strain European corn borer Ostrinia nubilalis (Lepidoptera: Crambidae)
作者：Ding, Xinhua;Wang, Xiaowu;Fu, Kaiyun;Jia, Zunzun;Rouzi, Aerziguli;Ahmat, Tursun;Guo, Wenchao;Zhang, Yue;Wang, Zhihui
关键词：
-
Effects of Dioscorea oppositifolia L. on growth performance, biochemical indicators, immunity, and intestinal health of weaned piglets
作者：Pan, Xiang-Yi;Qiu, Zheng-Ying;Liu, Chen;Li, Si-Fan;Shi, Xiong-Wei;Ge, Shao-Guang;Xin, Rui-Hua;Pan, Xiang-Yi;Qiu, Zheng-Ying;Liu, Chen;Li, Si-Fan;Shi, Xiong-Wei;Ge, Shao-Guang;Xin, Rui-Hua;Pan, Xiang-Yi;Qiu, Zheng-Ying;Liu, Chen;Li, Si-Fan;Shi, Xiong-Wei;Ge, Shao-Guang;Xin, Rui-Hua;Wang, Chuan;Wang, Xiaowu;Huang, Li-Na
关键词：
Dioscorea oppositifolia L.; weaned piglets; growth performance; immune performance; intestinal health; gut microbiome -
PlantDeepMeth: A Deep Learning Model for Predicting DNA Methylation States in Plants
作者：Guo, Zhongwei;Hou, Xilin;Li, Ying;Guo, Zhongwei;Fan, Wenyuan;Cai, Chengcheng;Zhang, Kang;Cheng, Feng;Cheng, Feng
关键词：deep learning; convolutional neural networks; recurrent neural network; methylation state; plant epigenomics
-
BnaA07.WRKY40 transcription factor confers enhanced defensive response to Sclerotinia sclerotiorum in Brassica napus
作者：Lin, Chen;Shen, Xuwen;Zhu, Tongtong;Zhang, Zidan;Zhang, Zhao;Long, Yuxiang;Zhang, Jinghao;Sun, Qinfu;Wu, Jian;Wang, Youping;Liu, Dongxiao;Dun, Xiaoling;Wang, Youping
关键词：BnaA07.WRKY40; defense genes; molecular mechanism; oilseed rape; Sclerotinia sclerotiorum; Sclerotinia stem rot
-
Developmental landscape and asymmetric gene expression in the leaf vasculature of Brassica rapa revealed by single-cell transcriptome
作者：Guo, Xinlei;Yuan, Jingping;Zhang, Yuanyuan;Wu, Jian;Wang, Xiaowu
关键词：
-
Intelligent survey method of rice diseases and pests using AR glasses and image-text multimodal fusion model
作者：Chen, Xiangfu;Liu, Yongjian;Wu, Jian;Yao, Qing;Yang, Baojun;Luo, Ju;Liu, Shuhua;Feng, Zelin;Lyu, Jun
关键词：Rice pest and disease; Field survey; Multimodal; RDP-Detector; AR glasses
