Characterization of a QTL on 7B for tiller number at the seedling stage in wheat landrace Yanda 1817
文献类型： 外文期刊
作者： Yang, Jian 1 ; Zhang, Yu'e 1 ; Hu, Weiguo 1 ; Zhou, Yanjie 2 ; Wang, Xicheng 1 ; Zhao, Hong 1 ; Zhou, Shenghui 3 ; Liu, Zhiyong 4 ; Cao, Tingjie 1 ;
作者机构： 1.Henan Acad Agr Sci, Henan Key Lab Wheat Biol, Natl Lab Wheat Engn, Key Lab Wheat Biol & Genet Breeding Cent Huang Hua, Zhengzhou 450002, Henan, Peoples R China
2.Henan Acad Agr Sci, Henan Inst Crop Mol Breeding, Zhengzhou, Peoples R China
3.Chinese Acad Agr Sci, Inst Crop Sci, Natl Crop Genebank, Beijing 100081, Peoples R China
4.Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Cell & Chromosome Engn, Beijing 100101, Peoples R China
关键词： Tiller number; Landrace; QTL mapping; RNA-seq; Candidate gene; Genetic marker
期刊名称：EUPHYTICA （ 影响因子：1.9； 五年影响因子：2.1 ）
ISSN： 0014-2336
年卷期： 2023 年 219 卷 4 期
页码：
收录情况： SCI
摘要： Effective tillers contribute to yield through adjusting plant population and affect 1000-kernel weight and kernel number per spike, which are favorable for wheat (Triticum aestivum L.) improvement. Wheat landraces show strong tillering ability and thus considerable potential for utilization in breeding. In this study, tiller number under nutrient solution condition was evaluated for 269 wheat recombinant inbred lines and their parents: the modern cultivar Beinong 6 and the landrace Yanda 1817, which exhibit strong tillering ability. A QTL, qTN-7B.1, significant in three independent experiments, was mapped between genetic marker Xgwm333 and 7ABD_wsnp_be518436B_Ta_2_1. The positive allele of qTN-7B.1 was from Yanda 1817, explained 10.21%-18.89% phenotypic variations. Pathway enrichment among tiller-bud transcriptome data for the two parents suggested that tillering ability was mainly associated with lignin biosynthesis and energy metabolism. Comparative genomic indicated that rice homologous gene TaMoc1-7B was located within qTN-7B.1 but was excluded for candidate since no high-impact sequence variations between parents and no transcript abundance during tiller bud development. Compared with published QTL for tiller suggested that qTN-7B.1 was most likely the novel. Further analysis the differentially gene expression analysis and variant through transcriptome data identified 33 nonsynonymous SNVs on 20 DEGs. In particular, TraesCS7B02G282100 encoded cinnamyl alcohol dehydrogenase crucially in lignin biosynthesis that the expression level of Beinong 6 exhibited 3.179-fold up-regulated and a synonymous SNP at conserved domain between parents, Therefore, TraesCS7B02G282100 was considered as candidate gene. Based on this SNP, a KASP marker was developed that anchored within qTN-7B.1 genetic region. This study laid the foundation for map-based cloning of qTN-7B.1 and provided genetic marker for plant architecture improvement through molecular breeding.
- 相关文献
作者其他论文 更多>>
-
Genetic diversity and population structure of modern wheat (Triticum aestivum L.) cultivars in Henan Province of China based on SNP markers
作者：Tang, Wenjing;Dong, Zhongdong;Li, Tianbao;Sun, Congwei;Cui, Dangqun;Tang, Wenjing;Gao, Lifeng;Wang, Xicheng;Chu, Zongli
关键词：Wheat; Genetic diversity; Population genetic structure; Principal component analysis; Single-nucleotide polymorphism
-
Genome-wide association study of grain morphology in wheat
作者：Gao, Le;Xu, Ke;Liu, Hao-dong;Zhang, Shu-hua;Yang, Xue-ju;Zhao, Yong;Yang, Jian;Song, Shi-jia
关键词：Genome-wide association study; Grain morphology; Single nucleotide polymorphic markers; Wheat
-
Unlocking the relationships among population structure, plant architecture, growing season, and environmental adaptation in Henan wheat cultivars
作者：Yang, Jian;Zhou, Yanjie;Hu, Weiguo;Zhang, Yu'e;Wang, Xicheng;Zhao, Hong;Cao, Tingjie;Zhou, Yanjie;Zhou, Yong;Chen, Yongxing;Liu, Zhiyong
关键词：Elite wheat cultivars; Population structure; Yield; GWAS; Selective sweep
-
Co-Regulation of Long Non-Coding RNAs with Allele-Specific Genes in Wheat Responding to Powdery Mildew Infection
作者：Hu, Weiguo;Wang, Guanghao;Wang, Siwen;Nie, Xiaojun;Wang, Changyou;Wang, Yajuan;Zhang, Hong;Ji, Wanquan;Hu, Weiguo;Wang, Yajuan;Zhang, Hong;Ji, Wanquan;Zhang, Hong
关键词：wheat; powdery mildew; lncRNAs; allele-specific functional genes; miRNA; co-regulation
-
Gene co-expression network analysis provides a novel insight into the dynamic response of wheat to powdery mildew stress
作者：Hu, Weiguo;Wang, Qiaohui;Wang, Siwen;Wang, Mengmeng;Wang, Changyou;Tian, Zengrong;Liu, Xinlun;Ji, Wanquan;Zhang, Hong;Wang, Changyou;Ji, Wanquan;Zhang, Hong;Hu, Weiguo
关键词：wheat; powdery mildew; weighted gene correlation network analysis; protein-protein interaction network; candidate genes; Blumeria graminis
-
Cloning, characterization of TaGS3 and identification of allelic variation associated with kernel traits in wheat (Triticum aestivum L.)
作者：Wu, Qiuhong;Chen, Yongxing;Guo, Guanghao;Liu, Zhiyong;Yang, Jian;Zhou, Yanjie;Zhang, Yu'e;Hu, Weiguo;Wang, Xicheng;Cao, Tingjie;Zhao, Hong
关键词：TaGS3; Kernel traits; Phylogenetic tree; Functional marker
-
Molecular characterization of a novel TaGL3-5A allele and its association with grain length in wheat (Triticum aestivum L.)
作者：Yang, Jian;Zhou, Yanjie;Zhang, Yu'e;Hu, Weiguo;Wang, Xicheng;Zhao, Hong;Cao, Tingjie;Wu, Qiuhong;Chen, Yongxing;Zhang, Panpan;Dong, Lingli;Liu, Zhiyong;Han, Jun
关键词：
