Full-length genomic characterizations of two canine parvoviruses prevalent in Northwest China

文献类型： 外文期刊

第一作者： Han, Shi-Chong

作者： Han, Shi-Chong;Guo, Hui-Chen;Sun, Shi-Qi;Shu, Long;Wei, Yan-Quan;Sun, De-Hui;Liu, Xiang-Tao;Han, Shi-Chong;Guo, Hui-Chen;Sun, Shi-Qi;Shu, Long;Wei, Yan-Quan;Sun, De-Hui;Liu, Xiang-Tao;Shu, Long;Cao, Sui-Zhong;Peng, Guang-Neng

作者机构：

关键词： Canine parvovirus;Full-length genome;Hairpin;Phylogenetic analysis

期刊名称：ARCHIVES OF MICROBIOLOGY （ 影响因子：2.552； 五年影响因子：2.475 ）

ISSN： 0302-8933

年卷期： 2015 年 197 卷 4 期

页码：

收录情况： SCI

摘要： Canine parvovirus (CPV) can cause acute hemorrhagic diarrhea and fatal myocarditis in young dogs. Currently, most studies have focused on the evolution of the VP2 gene, whereas the full-length genome of CPV has been rarely reported. In this study, the whole genomes of CPV-LZ1 and CPV-LZ2 strains prevalent in Northwest China were determined and analyzed in comparison with those of the reference CPVs. The genome sequences of both LZ strains consisted of 5053 nucleotides. CPV-LZ1 and CPV-LZ2 strains were designated as new CPV-2a and CPV-2b, respectively. Sequence alignment analysis results revealed that these two new strains underwent specific unique variations during the process of local adaption. The left non-translated regions of these strains formed a Y-shaped hairpin structure, whereas the right non-translated regions lacked the reiteration of DNA sequence. A phylogenetic tree constructed from 33 whole coding regions of CPVs showed a strong spatial clustering, and these two strains belonged to the Chinese strain cluster lineage. This study provides a method to obtain the full-length genome of CPV. The isolation and characterization of these viruses adds incrementally to the knowledge of the full-length genome of CPV. The results from this study also provide insight into the molecular epidemiology and genetic diversity of the CPV field isolates from Northwest China and can be useful in preventing and controlling CPV infection in this region.

分类号：

  • 相关文献

[1]Genetic characterization of the complete genome of a mutant canine parvovirus isolated in China. Li, Chuanfeng,Tang, Jingyu,Chen, Zongyan,Li, Qi,Wang, Quan,Meng, Chunchun,Liu, Guangqing,Tang, Jingyu,Wang, Yong,Li, Qi,Huang, Zhenhua. 2018

[2]Phylogenetic Analysis of Canine Parvovirus VP2 Gene in China. Yi, L.,Tong, M.,Cheng, Y.,Cheng, S.,Song, W..

[3]Typing of Canine Parvovirus Strains Circulating in North-East China. Zhao, H.,Wang, J.,Cheng, Y.,Lin, P.,Zhu, H.,Yi, L.,Zhang, S.,Guo, L.,Cheng, S.,Jiang, Y.,Han, G..

[4]Phylogenetic Analysis of Canine Parvovirus Isolates from Sichuan and Gansu Provinces of China in 2011. Xu, J.,Guo, H. -C.,Wei, Y. -Q.,Shu, L.,Sun, S. -Q.,Xu, J.,Shu, L.,Li, J. -S.,Cao, S. -Z.,Wang, J..

[5]Molecular characterization of China rabies virus vaccine strain. Jiao, Wenqiang,Yin, Xiangping,Li, Zhiyong,Lan, Xi,Li, Xuerui,Tian, Xiaoting,Li, Baoyu,Yang, Bin,Zhang, Yun,Liu, Jixing. 2011

[6]Molecular epidemiological and phylogenetic analyses of canine parvovirus in domestic dogs and cats in Beijing, 2010-2013. Wu, Jing,Gao, Xin-Tao,Hou, Shao-Hua,Guo, Xiao-Yu,Yuan, Wei-Feng,Xin, Ting,Zhu, Hong-Pei,Jia, Hong,Yang, Xue-Shong.

[7]Continuing evolution of canine parvovirus in China: Isolation of novel variants with an Ala5Gly mutation in the VP2 protein. Wang, Jianke,Lin, Peng,Zhao, Hang,Cheng, Yuening,Zhu, Hongwei,Wu, Hua,Cheng, Shipeng,Cheng, Yuening,Jiang, Zhong.

[8]Molecular detection and genomic characterization of Torque teno canis virus in domestic dogs in Guangxi Province, China. Sun, Wenchao,Jin, Ningyi,Sun, Wenchao,Xie, Changzhan,Liang, Cao,Zhao, Guanyu,Zhang, Ping,Han, Jicheng,Jing, Jie,Wen, Shubo,Xiao, Pengpeng,Cui, Zhuodong,Zhang, Jinyong,Lu, Huijun,Jin, Ningyi,Zheng, Min,Ren, Jingqiang,Liu, Hao,Lu, Huijun,Jin, Ningyi.

[9]Establishment and evaluation of a novel TaqMan probe-based real-time PCR for detection of Canine Parvovirus. Shi, Lijun,Zhao, Zhanzhong,Wang, Jing,Yuan, WeiFeng,Zhu, Hongfei,Li, Gang,Yin, Huiqiong,Zhang, Jingang. 2012

[10]Molecular characterisation of canine parvovirus strains circulating in China. Hou, S. H.,Zhu, H. F.,Zhang, Q.,Zhai, G. Q.,Wang, Z.,Xu, X. M.. 2010

[11]High resolution melting curve analysis as a new tool for rapid identification of canine parvovirus type 2 strains. Bingga, Gali,Ding, Shuangyang,Bingga, Gali,Liu, Zhicheng,Zhang, Jianfeng,Lin, Lifeng,Zhu, Yujun,Guo, Pengju.

[12]Self-assembly of virus-like particles of canine parvovirus capsid protein expressed from Escherichia coli and application as virus-like particle vaccine. Xu, Jin,Guo, Hui-Chen,Wei, Yan-Quan,Dong, Hu,Han, Shi-Chong,Ao, Da,Sun, De-Hui,Wang, Hai-Ming,Sun, Shi-Qi,Xu, Jin,Guo, Hui-Chen,Wei, Yan-Quan,Dong, Hu,Han, Shi-Chong,Ao, Da,Sun, De-Hui,Wang, Hai-Ming,Sun, Shi-Qi,Xu, Jin,Ao, Da,Cao, Sui-Zhong.

[13]Two potential recombinant rabies vaccines expressing canine parvovirus virion protein 2 induce immunogenicity to canine parvovirus and rabies virus. Luo, Jun,Shi, Hehe,Niu, Xuefeng,Long, Teng,Zhao, Jing,Tian, Qin,Wang, Yifei,Chen, Hao,Guo, Xiaofeng,Luo, Jun,Shi, Hehe,Niu, Xuefeng,Long, Teng,Zhao, Jing,Tian, Qin,Wang, Yifei,Chen, Hao,Guo, Xiaofeng,Tan, Yeping.

[14]Characterization of the Toxoplasma gondii hsp60 gene sequences from different hosts and geographical locations. Lu, J.,Zhou, D. H.,Chen, J.,Zhang, N. Z.,Wang, R. A.,Zhu, X. Q.,Lu, J.,Wang, R. A.,Weng, Y. B.. 2014

[15]An appendage-bearing coelomycete Pseudotruncatella arezzoensis gen. and sp. nov. (Amphisphaeriales genera incertae sedis) from Italy, with notes on Monochaetinula. Perera, Rekhani H.,Liu, Jian-Kui,Liu, Zuo-Yi,Perera, Rekhani H.,Hyde, Kevin D.,Senanayake, Indunil C.,Saichana, Natsaran,Perera, Rekhani H.,Hyde, Kevin D.,Senanayake, Indunil C.,Maharachchikumbura, Sajeewa S. N.,Al-Sadi, Abdullah M.,Hyde, Kevin D.,Senanayake, Indunil C.,Hyde, Kevin D.,Senanayake, Indunil C.,Bhat, D. Jayarama,Camporesi, Erio,Camporesi, Erio,Camporesi, Erio,Jones, E. B. Gareth. 2018

[16]Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides. Tian, C,Wang, GC,Ye, NH,Zhang, BY,Fan, XL,Zeng, CK.

[17]Genome-wide analysis of the TPX2 family proteins in Eucalyptus grandis. Gan, Siming,Du, Pingzhou,Yao, Yuan,Wang, Yuqi,Du, Pingzhou,Yao, Yuan,Xie, Qiaoli,Wu, Ai-Min,Du, Pingzhou,Yao, Yuan,Xie, Qiaoli,Wu, Ai-Min,Du, Pingzhou,Wang, Jinyan,Zhang, Baolong,Kumar, Manoj,Wang, Yuqi. 2016

[18]Genome-Wide Identification and Expression Profile of Dof Transcription Factor Gene Family in Pepper (Capsicum annuum L.). Wu, Zhiming,Bang, Guansheng,Cheng, Jiaowen,Cui, Junjie,Hu, Kailin,Xu, Xiaowan,Luo, Xirong,Chen, Xiaocui,Tang, Xiangqun,Qin, Cheng,Qin, Cheng. 2016

[19]Next-generation sequencing of the mitochondrial genome of Dolichovespula panda (Hymenoptera: Vespidae) with a phylogenetic analysis of Vespidae. Fan, Xu-Lei,Tan, Qing-Qing,Tan, Jiang-Li,Fan, Xu-Lei,Gong, Ya-Jun,Chen, Peng-Yan,Wei, Shu-Jun. 2017

[20]Molecular characterization of a new begomovirus infecting Senecio scandens in China. Zhou, XP,Cai, JH,Li, GX. 2005

作者其他论文 更多>>

微信小程序