AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes
文献类型: 外文期刊
第一作者: Hu, Ruirui
作者: Hu, Ruirui;Li, Fulin;Liu, Chuyang;Wang, Yue;Cui, Chaowen;Ni, Wei;Hu, Shengwei;Chen, Yifan;Li, Jiawei;Luo, Chengfang;Zhou, Ping;Yang, Qing-Yong;Chen, Yifan;Li, Jiawei;Luo, Chengfang;Yang, Qing-Yong;Ma, Zhongchen
作者机构:
期刊名称:NUCLEIC ACIDS RESEARCH ( 影响因子:14.9; 五年影响因子:16.4 )
ISSN: 0305-1048
年卷期: 2023 年
页码:
收录情况: SCI
摘要: The Animal Meta-omics landscape database (AnimalMetaOmics, https://yanglab.hzau.edu.cn/animalmetaomics#/) is a comprehensive and freely available resource that includes metagenomic, metatranscriptomic, and metaproteomic data from various non-human animal species and provides abundant information on animal microbiomes, including cluster analysis of microbial cognate genes, functional gene annotations, active microbiota composition, gene expression abundance, and microbial protein identification. In this work, 55 898 microbial genomes were annotated from 581 animal species, including 42 924 bacterial genomes, 12 336 virus genomes, 496 archaea genomes and 142 fungi genomes. Moreover, 321 metatranscriptomic datasets were analyzed from 31 animal species and 326 metaproteomic datasets from four animal species, as well as the pan-genomic dynamics and compositional characteristics of 679 bacterial species and 13 archaea species from animal hosts. Researchers can efficiently access and acquire the information of cross-host microbiota through a user-friendly interface, such as species, genomes, activity levels, expressed protein sequences and functions, and pan-genome composition. These valuable resources provide an important reference for better exploring the classification, functional diversity, biological process diversity and functional genes of animal microbiota. Graphical Abstract
分类号:
- 相关文献
作者其他论文 更多>>
-
A dual-RPA based lateral flow strip for sensitive, on-site detection of CP4-EPSPS and Cry1Ab/Ac genes in genetically modified crops
作者:Wang, Jinbin;Wang, Yu;Hu, Xiuwen;Chen, Yifan;Jiang, Wei;Zeng, Haijuan;Liu, Hua;Wang, Jinbin;Chen, Yifan;Jiang, Wei;Zeng, Haijuan;Liu, Hua;Wang, Yu;Liu, Xiaofeng;Liu, Juan;Zhu, Lemei;Liu, Juan;Zhu, Lemei;Zeng, Haijuan;Liu, Hua
关键词:Genetically modified crops; On-site detection; Lateral flow test strips; Dual recombinase polymerase amplification; (RPA)
-
Entropy-driven multicolor DNA nanoflowers for simultaneous and rapid detection of multiple heavy metal ions in water
作者:Wang, Jin;Wang, Yue;Lu, Yanyan;Zhu, Nuanfei;Selvan, Govindaraj Tamil;Ravikumar, Ayyanuservai;Zhang, Zhen;Li, Yanshen;Wei, Shulin
关键词:Signal amplification; Rapid detection; Ultrasensitive detection; Heavy metal ions; DNAzymes; Biosensors
-
A prolific and robust whole-genome genotyping method using PCR amplification via primer-template mismatched annealing
作者:Zhao, Sheng;Wang, Liqun;Luo, Minxuan;Zhi, Haijian;Zhao, Sheng;Zhang, Cuicui;Luo, Minxuan;Zhang, Peng;Wang, Yue;Malik, Waqar Afzal;Chen, Peng;Lu, Hong;Xiang, Yong;Liu, Yuwen;Ruan, Jue;Qian, Qian;Chang, Yuxiao;Qiu, Xianjin;Wang, Chongrong
关键词:background selection; foreground genotyping; primer-template mismatched annealing; marker-assisted breeding; whole-genome genotyping
-
Land use intensification alters the relative contributions of plant functional diversity and soil properties on grassland productivity
作者:Zhang, Minna;Li, Guangyin;Wang, Yue;Wang, Ling;Pan, Duofeng;Sun, Jinyan
关键词:Plant diversity; Productivity; Land use intensification; Functional traits; Soil properties
-
A Rapid and Visual Method for Nucleic Acid Detection of Escherichia coli O157:H7 Based on CRISPR/Cas12a-PMNT
作者:Jiang, Wei;He, Chuan;Bai, Lan;Chen, Yifan;Jia, Junwei;Lv, Beibei;Tang, Xueming;Wu, Xiao;Jiang, Wei;He, Chuan;Bai, Lan;Chen, Yifan;Pan, Aihu;Lv, Beibei;Tang, Xueming;Wu, Xiao;Jiang, Wei;He, Chuan;Bai, Lan;Chen, Yifan;Jia, Junwei;Pan, Aihu;Lv, Beibei;Tang, Xueming;Wu, Xiao;Tang, Xueming
关键词:foodborne pathogenic bacteria; Escherichia coli O157; H7; nucleic acid detection; POCT; visual method; CRISPR-Cas12a; PMNT
-
Does Social Capital Improve the Effectiveness of Public Service? An Insight from Rural-to-Urban Migrants in China
作者:Wang, Yue;Zhu, Honggen;Liu, Yu;Aziz, Noshaba
关键词:Social capital; Rural-to-urban migrants; The effectiveness of public service
-
Effects of combined addition of 3-nitrooxypropanol and vitamin B12 on methane and propionate production in dairy cows by in vitro-simulated fermentation
作者:Liu, Zihao;Wang, Kun;Nan, Xuemei;Yang, Liang;Wang, Yue;Zhang, Fan;Cai, Meng;Zhao, Yiguang;Xiong, Benhai
关键词:3-nitrooxypropanol; rumen microbiota; vitamin B12; propionate formation; methanogenesis