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Genome-wide identification of seed storage protein gene regulators in wheat through coexpression analysis

文献类型： 外文期刊

作者： Luo, Guangbin 1 ; Shen, Lisha 1 ; Zhao, Shancen 3 ; Li, Ruidong 4 ; Song, Yanhong 1 ; Song, Shuyi 1 ; Yu, Kang 3 ; Yang, 1 ;

作者机构： 1.Chinese Acad Sci, Innovat Acad Seed Design, Natl Ctr Plant Gene Res, State Key Lab Plant Cell & Chromosome Engn,Inst G, 1 West Beichen Rd, Beijing 100101, Peoples R China

2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China

3.BGI Shenzhen, BGI Inst Appl Agr, Shenzhen 518120, Peoples R China

4.Univ Calif Riverside, Grad Program Genet Genom & Bioinformat, Riverside, CA 92521 USA

5.Henan Agr Univ, Coll Agron, Collaborat Innovat Ctr Grain Crops Henan, 63 Nongye Rd, Zhengzhou 450002, Peoples R China

6.Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China

7.Hebei Agr Univ, Coll Agron, State Key Lab North China Crop Improvement & Regu, Baoding 071000, Hebei, Peoples R China

关键词： seed storage protein; transcriptional regulator; coexpression analysis; Triticum urartu; Triticum aestivum

期刊名称：PLANT JOURNAL （ 影响因子：6.486； 五年影响因子：7.666 ）

ISSN： 0960-7412

年卷期：

页码：

收录情况： SCI

摘要： Only a few transcriptional regulators of seed storage protein (SSP) genes have been identified in common wheat (Triticum aestivum L.). Coexpression analysis could be an efficient approach to characterize novel transcriptional regulators at the genome-scale considering the correlated expression between transcriptional regulators and target genes. As the A genome donor of common wheat, Triticum urartu is more suitable for coexpression analysis than common wheat considering the diploid genome and single gene copy. In this work, the transcriptome dynamics in endosperm of T. urartu throughout grain filling were revealed by RNA-Seq analysis. In the coexpression analysis, a total of 71 transcription factors (TFs) from 23 families were found to be coexpressed with SSP genes. Among these TFs, TuNAC77 enhanced the transcription of SSP genes by binding to cis-elements distributed in promoters. The homolog of TuNAC77 in common wheat, TaNAC77, shared an identical function, and the total SSPs were reduced by about 24% in common wheat when TaNAC77 was knocked down. This is the first genome-wide identification of transcriptional regulators of SSP genes in wheat, and the newly characterized transcriptional regulators will undoubtedly expand our knowledge of the transcriptional regulation of SSP synthesis.

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