Location of Tandem Repeats on Wheat Chromosome 5B and the Breakpoint on the 5BS Arm in Wheat Translocation T7BS.7BL-5BS Using Single-Copy FISH Analysis
文献类型： 外文期刊
作者： Zhang, Wei 1 ; Tang, Zongxiang 1 ; Luo, Jie 1 ; Li, Guangrong 2 ; Yang, Zujun 2 ; Yang, Manyu 3 ; Yang, Ennian 3 ; Fu, Shulan 1 ;
作者机构： 1.Sichuan Agr Univ, Coll Agron, Chengdu 611130, Peoples R China
2.Univ Elect Sci & Technol China, Ctr Informat Biol, Sch Life Sci & Technol, Chengdu 611731, Peoples R China
3.Sichuan Acad Agr Sci, Crop Res Inst, Chengdu 610066, Peoples R China
关键词： single-copy FISH; ND-FISH; tandem repeats; wheat translocation; breakpoint
期刊名称：PLANTS-BASEL （ 影响因子：4.658； 五年影响因子：4.827 ）
ISSN：
年卷期： 2022 年 11 卷 18 期
页码：
收录情况： SCI
摘要： Wheat (Triticum aestivum L.) is rich in tandem repeats, and this is helpful in studying its karyotypic evolution. Some tandem repeats have not been assembled into the wheat genome sequence. Alignment using the blastn tool in the B2DSC web server indicated that the genomic sequence of 5B chromosome (IVVGSC RefSeq v2.1) does not contain the tandem repeat pTa-275, and the tandem repeat (GA)(26) distributed throughout the whole 5B chromosome. The nondenaturing fluorescence in situ hybridization (ND-FISH) using the oligonucleotide (oligo) probes derived from pTa-275 and (GA)(26) indicated that one signal band of pTa-275 and two signal bands of (GA)(26) appeared on the 5B chromosome of Chinese Spring wheat, indicating the aggregative distribution patterns of the two kinds of tandem repeats. Single-copy FISH indicated that the clustering region of pTa-275 and the two clustering regions of (GA)(26) were located in similar to 160-201 Mb, similar to 153-157 Mb, and similar to 201-234 Mb intervals, respectively. Using ND-FISH and single-copy FISH technologies, the translocation breakpoint on the 5BS portion of the translocation T7BS.7BL-5BS, which exists widely in north-western European wheat cultivars, was located in the region from 157,749,421 bp to 158,555,080 bp (similar to 0.8 Mb), and this region mainly contains retrotransposons, and no gene was found. The clustering regions of two kinds of tandem repeats on wheat chromosome 5B were determined and this will be helpful to improve the future sequence assembly of this chromosome. The sequence characteristics of the translocation breakpoint on the translocation T7BS.7BL-5BS obtained in this study are helpful to understand the mechanism of wheat chromosome translocation.
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