Complete mitochondrial genome sequence and gene organization of Chinese indigenous chickens with phylogenetic considerations
文献类型: 外文期刊
作者: Zhao, F. P. 1 ; Fan, H. Y. 2 ; Li, G. H. 4 ; Zhang, B. K. 1 ;
作者机构: 1.China Agr Univ, Minist Agr, Key Lab Feed Safety & Bioavailabil, State Key Lab Anim Nutr,Coll Anim Sci & Technol, Beijing, Peoples R China
2.Chinese Acad Agr Sci, Inst Anim Sci, Beijing, Peoples R China
3.Gansu Agr Univ, Coll Anim Sci & Technol, Lanzhou, Gansu, Peoples R China
4.Chinese Acad Agr Sci, Poultry Inst, Yangzhou, Jiangsu, Peoples R China
关键词: Chicken;Mitochondrial genome;Phylogenetic relationship
期刊名称:GENETICS AND MOLECULAR RESEARCH ( 影响因子:0.764; 五年影响因子:0.912 )
ISSN: 1676-5680
年卷期: 2016 年 15 卷 2 期
页码:
收录情况: SCI
摘要: In this study, we sequenced the complete mitochondrial DNA of Chinese indigenous Jinhu Black-bone and Rugao chickens. The two chicken mitochondrial genomes were deposited in GenBank under accession Nos. KP742951 and KR347464, respectively. The complete mitochondrial genomes of Jinhu Black-bone and Rugao chickens were sequenced and found to span 16,785 and 16,786 bp, respectively, and consisted of 22 tRNA genes, two rRNA genes (12S rRNA and 16S rRNA), 13 protein-coding genes, and one control region (D-loop). The majority of genes were positioned on the H-strand, and the ND6 and eight tRNA genes were found to be encoded on the L-strand. The mitogenomes showed a similar gene order to that of the published Gallus gallus genome, as neither included a control region. The overall base composition of the genome of the two chickens was A = 30.22/30.28%, G = 13.57/13.49%, T = 23.74/23.76%, and C = 32.48/32.48%. Nucleotide skewness of the coding strands of the two chicken genomes (AT-skew = 0.12, GC-skew = -0.41) was biased towards T and G. Phylogenetic analysis revealed 29 subspecies, and the molecular genetic relationship among the 29 subspecies was identical to that of traditional taxonomy.
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