Chromosome conformation capture resolved near complete genome assembly of broomcorn millet
文献类型： 外文期刊
作者： Shi, Junpeng 1 ; Ma, Xuxu 1 ; Zhang, Jihong 1 ; Zhou, Yingsi 1 ; Liu, Minxuan 3 ; Huang, Liangliang 1 ; Sun, Silong 1 ; Z 1 ;
作者机构： 1.China Agr Univ, State Key Lab Agrobiotechnol, Beijing 100193, Peoples R China
2.China Agr Univ, Natl Maize Improvement Ctr, Dept Plant Genet & Breeding, Beijing 100193, Peoples R China
3.Chinese Acad Agr Sci, Inst Crop Sci, Beijing 100081, Peoples R China
4.Annoroad Gene Technol Beijing Co Ltd, Beijing 100176, Peoples R China
5.Shandong Agr Univ, Coll Agron, State Key Lab Crop Biol, Tai An 271018, Shandong, Peoples R China
6.Shanxi Acad Agr Sci, Inst Crop Germplasm Resources, Taiyuan 030031, Shanxi, Peoples R China
7.China Agr Univ, Ctr Crop Funct Genom & Mol Breeding, Beijing 100193, Peoples R China
期刊名称：NATURE COMMUNICATIONS （ 影响因子：14.919； 五年影响因子：15.805 ）
ISSN： 2041-1723
年卷期： 2019 年 10 卷
页码：
收录情况： SCI
摘要： Broomcorn millet (Panicum miliaceum L.) has strong tolerance to abiotic stresses, and is probably one of the oldest crops, with its earliest cultivation that dated back to ca. similar to 10,000 years. We report here its genome assembly through a combination of PacBio sequencing, BioNano, and Hi-C (in vivo) mapping. The 18 super scaffolds cover similar to 95.6% of the estimated genome (similar to 887.8 Mb). There are 63,671 protein-coding genes annotated in this tetraploid genome. About similar to 86.2% of the syntenic genes in foxtail millet have two homologous copies in broomcorn millet, indicating rare gene loss after tetraploidization in broomcorn millet. Phylogenetic analysis reveals that broomcorn millet and foxtail millet diverged around similar to 13.1 Million years ago (Mya), while the lineage specific tetraploidization of broomcorn millet may be happened within similar to 5.91 million years. The genome is not only beneficial for the genome assisted breeding of broomcorn millet, but also an important resource for other Panicum species.
- 相关文献
作者其他论文 更多>>
-
Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome
作者：Sun, Yanling;Liu, Yang;Shi, Jinfeng;Liang, Chengzhi;Chen, Mingsheng;Sun, Yanling;Liu, Yang;Liang, Chengzhi;Chen, Jinfeng;Chen, Mingsheng;Liu, Yang;Chen, Jinfeng;Wang, Lun;Yang, Jun;Yang, Jun
关键词：broomcorn millet; polyploid; diploidization; gene loss; transposable element
-
The IMD pathway in Hemipteran: A comparative analysis and discussion
作者：Ma, Li;Yan, Xizhong;Hao, Chi;Wang, Han;Wei, Jiufeng;Qie, Xingtao;Ma, Li;Ma, Li;Lu, Ping;Lu, Zhiqiang;Liu, Shanlin
关键词：IMD pathway; Hemipteran; Antimicrobial peptide (AMP); Absence; Trade-off
-
Waxy allelic diversity in common millet (Panicum miliaceum L.) in China
作者：Wang, Ruiyun;Liu, Xiaohuan;Ji, Xu;Wang, Ruiyun;Wang, Haigang;Chen, Ling;Qiao, Zhijun;Lu, Ping;Liu, Minxuan;Teng, Bin
关键词：Common millet; Waxy gene; SNP; Starch
-
Soil bacterial diversity changes in different broomcorn millet intercropping systems
作者：Cao, Xiaoning;Liu, Sichen;Wang, Junjie;Wang, Haigang;Chen, Ling;Tian, Xiang;Zhang, Lijun;Chang, Jianwu;Wang, Lun;Mu, Zhixin;Qiao, Zhijun
关键词：bacterial community;broomcorn millet;intercropping;legume;monoculture
-
Response of broomcorn millet (Panicum miliaceum L.) genotypes from semiarid regions of China to salt stress
作者：Liu, Minxuan;Zhang, Shuang;Wang, Yinyue;Lu, Ping;Qiao, Zhijun;Wang, Yinyue
关键词：Salinity tolerance;Genetic variation;Ion response;Broomcorn millet
-
Diversity and Cultivation of Broomcorn Millet (Panicum miliaceum L.) in China: A Review
作者：Wang, Ruiyun;Han, Yuanhuai;Wang, Ruiyun;Qiao, Zhijun;Wang, Lun;Han, Yuanhuai;Hunt, Harriet V.
关键词：Broomcorn millet (Panicum miliaceum L.);diversity;cultivation;China
-
A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)
作者：Jia, Guanqing;Zhi, Hui;Chai, Yang;Yang, Lifang;Hao, Hangfei;Liu, Hongkuan;Lu, Ping;Diao, Xianmin;Huang, Xuehui;Zhao, Yan;Zhao, Qiang;Li, Wenjun;Liu, Kunyan;Lu, Hengyun;Zhu, Chuanrang;Lu, Yiqi;Zhou, Congcong;Fan, Danlin;Weng, Qijun;Guo, Yunli;Huang, Tao;Zhang, Lei;Lu, Tingting;Feng, Qi;Han, Bin;Zhang, Ning;Li, Jiayang;Zhang, Ning;Li, Jiayang;Li, Yuhui;Guo, Erhu;Wang, Shujun;Wang, Suying;Liu, Jinrong;Zhang, Wenfei;Chen, Guoqiu;Zhang, Baojin;Li, Wei;Wang, Yongfang;Li, Haiquan;Diao, Xianmin;Zhao, Baohua;Diao, Xianmin
关键词：
