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Exploring the mechanism of active components from ginseng to manage diabetes mellitus based on network pharmacology and molecular docking

文献类型： 外文期刊

作者： Li, Ming-han 1 ; Jin, Ming-hui 1 ; Hu, Rui-yi 1 ; Tang, Shan 1 ; Li, Ke-ke 3 ; Gong, Xiao-Jie 3 ; Sun, Yin-shi 4 ; Wang, Ying-ping 1 ; Wang, Zi 1 ; Li, Wei 1 ;

作者机构： 1.Jilin Agr Univ, Coll Chinese Med Mat, Changchun 130118, Peoples R China

2.Natl & Local Joint Engn Res Ctr Ginseng Breeding &, Changchun 130118, Peoples R China

3.Dalian Minzu Univ, Key Lab Biotechnol & Bioresources Utilizat, Minist Educ, Dalian 116600, Liaoning, Peoples R China

4.Chinese Acad Agr Sci, Inst Special Wild Econ Anim & Plants, Changchun, Peoples R China

期刊名称：SCIENTIFIC REPORTS （ 影响因子：4.6； 五年影响因子：4.9 ）

ISSN： 2045-2322

年卷期： 2023 年 13 卷 1 期

页码：

收录情况： SCI

摘要： A large body of literature has shown that ginseng had a role in diabetes mellitus management. Ginsenosides are the main active components of ginseng. But what ginsenosides can manage in diabetic are not systematic. The targets of these ginsenosides are still incomplete. Our aim was to identify which ginsenosides can manage diabetes mellitus through network pharmacology and molecular docking. To identify the targets of these ginsenosides. In this work, we retrieved and screened ginsenosides and corresponding diabetes mellitus targets across multiple databases. PPI networks of the genes were constructed using STRING, and the core targets were screened out through topological analysis. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses were performed by using the R language. Finally, molecular docking was performed after bioinformatics analysis for verification. Our research results showed that 28 ginsenosides in ginseng might be against diabetes mellitus by modulating related proteins such as VEGFA, Caspase 3, and TNF-alpha. Among the 28 ginsenosides, 20(R)-Protopanaxatriol, 20(R)-Protopanaxadiol, and Ginsenoside Rg1 might play a significant role. Kyoto Encyclopedia of Genes and Genomes and Gene Ontology enrichment analysis showed that the management of diabetes mellitus by ginsenosides may be related to the positive regulation of reactive oxygen metabolic processes, associated with the insulin signaling pathway, TNF signaling pathway, and AMPK signaling pathway. Molecular docking results and molecular dynamics simulation showed that most ginsenosides could stably bind to the core target, mainly hydrogen bonding and hydrophobic bond. This study suggests the management of ginseng on diabetes mellitus. We believe that our results can contribute to the systematic study of the mechanism of ginsenosides for the management of diabetes mellitus. At the same time, it can provide a theoretical basis for subsequent studies on the management of ginsenosides in diabetes mellitus.

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