Comparative analyses of copy number variations between swamp buffaloes and river buffaloes
文献类型: 外文期刊
第一作者: Yang, Lv
作者: Yang, Lv;Han, Jiazheng;Li, Fan;Han, Xiaotao;Xia, Han;Hua, Guohua;Yang, Liguo;Zhou, Yang;Yang, Lv;Han, Jiazheng;Li, Fan;Han, Xiaotao;Xia, Han;Hua, Guohua;Yang, Liguo;Zhou, Yang;Deng, Tingxian;Quan, Fanfan;Hua, Guohua;Yang, Liguo;Zhou, Yang
作者机构:
关键词: CNV; F-ST; population structure analysis; river buffalo; swamp buffalo
期刊名称:ANIMAL GENETICS ( 影响因子:2.4; 五年影响因子:2.8 )
ISSN: 0268-9146
年卷期: 2023 年 54 卷 2 期
页码:
收录情况: SCI
摘要: As an important source of genomic variation, copy number variation (CNV) contributes to environmental adaptation in worldwide buffaloes. Despite this importance, CNV divergence between swamp buffaloes and river buffaloes has not been studied previously. Here, we report 21 152 CNV regions (CNVRs) in 141 buffaloes of 20 breeds detected through multiple CNV calling strategies. Only 248 CNVRs were shared between river buffalo and swamp buffalo, reflecting great variation of CNVRs between the two subspecies. Population structure analysis based on CNVs successfully separated the two buffalo subspecies. We further assessed CNV divergence by calculating F-ST for genome-wide CNVs. Totally, we identified 110 significantly divergent CNV segments and 44 putatively selected genes between river buffaloes and swamp buffaloes. In particular, LALBA, a key gene controlling milk production in cattle, presented a highly differentiated CNV in the promoter region, which makes it a strong functional candidate gene for differences between swamp buffaloes and river buffaloes in traits related to milk production. Our study provides useful information of CNVs in buffaloes, which may help explain the genetic differences between the two subspecies.
分类号:
- 相关文献
作者其他论文 更多>>
-
Genetic mechanisms of petal morphogenesis in Eustoma grandiflorum
作者:Liang, Yuwei;Fang, Huiyi;Wang, Qi;Sun, Fuhui;Bi, Bo;Zhang, Liangsheng;Zhao, Peng;Liu, Bin;Sun, Dan;Ruan, Jiwei;Jin, Chunlian;Li, Fan;Zhao, Peng;Liu, Bin;Zhang, Liangsheng;Bi, Bo
关键词:Eustoma grandiflorum; petal morphogenesis; transcriptional analysis; WGCNA; qRT-PCR; YAB3; LFY
-
Encapsulation and delivery of phage as a novel method for gut flora manipulation in situ: A review
作者:Yang, Yufan;Zou, Geng;Zhou, Yang;Li, Jinquan;Yang, Yufan;Zou, Geng;Li, Jinquan;Du, Hu;Song, Zhiyong;Li, Hao;Tanf, Chen;Chen, Huanchun;Fischetti, Vincent A.;Li, Jinquan;Li, Jinquan
关键词:Gut flora regulation; Phage delivery; Encapsulation materials; Encapsulation carriers
-
One-Pot Assay for Rapid Detection of Benzimidazole Resistance in Venturia carpophila by Combining RPA and CRISPR/Cas12a
作者:Hu, Jia-Jie;Liu, Duo;Cai, Min-Zheng;Luo, Chao-Xi;Hu, Jia-Jie;Liu, Duo;Cai, Min-Zheng;Luo, Chao-Xi;Zhou, Yang;Yin, Wei-Xiao
关键词:fungicide resistance; one-pot detection; MBC fungicides; Venturia carpophila; RPA; CRISPR/Cas12a
-
Studies of the pollen characteristics and the taxonomic significance of Impatiens from the Yunnan-Guizhou Plateau
作者:He, Hai-hao;Ma, Ming-lan;Chen, Xin-yi;Li, Xin-yi;Li, Fan;Zhao, Qiu-yan;He, Xiao-shuai;Tan, Yi;Huang, Hai-quan;Huang, Mei-juan;Qu, Su-ping
关键词:Impatiens; micromorphology; palynology; pollen; SEM
-
Rare earth elements in sediments of the Pearl River Estuary, China: distribution, influencing factors, and multi-index assessment
作者:Chen, Fang;Ma, Sheng-Zhong;Wang, Yan-Mei;Yu, Shao-Hua;Zhou, Yang;Wu, Cong;Peng, Zhi-Yuan;Gu, Yang-Guang;Chen, Fang;Ma, Sheng-Zhong;Wang, Yan-Mei;Yu, Shao-Hua;Zhou, Yang;Wu, Cong;Peng, Zhi-Yuan;Gu, Yang-Guang;Gu, Yang-Guang
关键词:Rare earth elements; Pollution indices; Ecological risks; Sediments; Contamination; Pearl River Estuary
-
Resistance to Powdery Mildew Is Conferred by Different Genetic Loci at the Adult-Plant and Seedling Stages in Winter Wheat Line Tianmin 668
作者:Hu, Jinghuang;Gebremariam, Tesfay Gebrekirstos;Qu, Yunfeng;Qiu, Dan;Shi, Xiaohan;Li, Yahui;Zhang, Hongjun;Yang, Li;Liu, Hongwei;Zhou, Yang;Li, Hongjie;Hu, Jinghuang;Wang, Baotong;Zhang, Peng;Liu, Zhiyong;Qu, Yunfeng;Qiu, Dan;Wu, Qiuhong;Li, Yahui;Luo, Ming;Yang, Lijian
关键词:APR; ASR; Blumeria graminis f; sp; tritici; BSR-Seq; KASP; QTL; Triticum aestivum
-
Improving the safety and efficacy of phage therapy from the perspective of phage-mammal interactions
作者:Zou, Geng;He, Lijun;Rao, Jing;Song, Zhiyong;Du, Hu;Li, Runze;Wang, Wenjing;Zhou, Yang;Liang, Lu;Chen, Huanchun;Li, Jinquan;Zou, Geng;He, Lijun;Rao, Jing;Li, Runze;Li, Jinquan;Song, Zhiyong;Wang, Wenjing;Liang, Lu;Li, Jinquan;Li, Jinquan
关键词:phage; interactions in phage-human; immune response; phage therapy; virome; microbiome