The complex genome and adaptive evolution of polyploid Chinese pepper (Zanthoxylum armatum and Zanthoxylum bungeanum)
文献类型： 外文期刊
第一作者： Hu, Lisong
作者： Hu, Lisong;Xu, Zhongping;Fan, Rui;Qin, Xiaowei;Yan, Lin;Ji, Xunzhi;Hao, Chaoyun;Wang, Qinghuang;Hu, Lisong;Fan, Rui;Qin, Xiaowei;Yan, Lin;Ji, Xunzhi;Hao, Chaoyun;Wang, Qinghuang;Hu, Lisong;Fan, Rui;Qin, Xiaowei;Yan, Lin;Ji, Xunzhi;Hao, Chaoyun;Wang, Qinghuang;Xu, Zhongping;Wang, Guanying;Wang, Fuqiu;Chen, Wei;Jin, Shuangxia;Meng, Minghui;Xu, Pan;Sim, Soonliang;Zhu, Huaguo;Zhu, Shu;Zhao, Hui;Zhao, Hui;Lindsey, Keith;Daniell, Henry;Wendel, Jonathan F.
作者机构：
关键词： Chinese pepper (Zanthoxylum armatum and Zanthoxylum bungeanum); polyploid; identified subgenomes; phenotypic innovation; adaptive evolution
期刊名称：PLANT BIOTECHNOLOGY JOURNAL （ 影响因子：13.263； 五年影响因子：11.619 ）
ISSN： 1467-7644
年卷期：
页码：
收录情况： SCI
摘要： Zanthoxylum armatum and Zanthoxylum bungeanum, known as 'Chinese pepper', are distinguished by their extraordinary complex genomes, phenotypic innovation of adaptive evolution and species-special metabolites. Here, we report reference-grade genomes of Z. armatum and Z. bungeanum. Using high coverage sequence data and comprehensive assembly strategies, we derived 66 pseudochromosomes comprising 33 homologous phased groups of two subgenomes, including autotetraploid Z. armatum. The genomic rearrangements and two whole-genome duplications created large (similar to 4.5 Gb) complex genomes with a high ratio of repetitive sequences (>82%) and high chromosome number (2n = 4x = 132). Further analysis of the high-quality genomes shed lights on the genomic basis of involutional reproduction, allomones biosynthesis and adaptive evolution in Chinese pepper, revealing a high consistent relationship between genomic evolution, environmental factors and phenotypic innovation. Our study provides genomic resources and new insights for investigating diversification and phenotypic innovation in Chinese pepper, with broader implications for the protection of plants under severe environmental changes.
分类号：
- 相关文献
作者其他论文 更多>>
-
Cyanidin-3-rutinoside from Mori Fructus ameliorates dyslipidemia via modulating gut microbiota and lipid metabolism pathway
作者：Zhong, Shi;Huo, Jin-Xi;Sun, Yu-Qing;Zhao, Hui;Dong, Xin-Tian;Feng, Jia-Yi;Li, You-Gui;Yang, Ya-Nan;Wu, Chong-Ming;Zhao, Hui;Dong, Xin-Tian;Feng, Jia-Yi;Zhao, Jin
关键词：Anthocyanins C3R; Dyslipidemia; Gut microbiota; MAPK signaling pathway; Mori Fructus; PI3K-Akt signaling pathway
-
Physiological activities, transcriptomes and metabolomes of Pyropia yezoensis conchocelis unveil the roles of pyPGK, pyBCKDHA, and pyDLD in response to freshwater soaking
作者：Huang, Xueying;Li, Feng;He, Linwen;Huang, Xueying;Wang, Yu;Zhao, Hui;Li, Huiliang;Gu, Fenglin;Tan, Deguan;Hu, Wei;Guo, Anping;Ji, Changmian;Huang, Xueying;Wang, Yu;Zhao, Hui;Li, Huiliang;Gu, Fenglin;Tan, Deguan;Hu, Wei;Guo, Anping;Ji, Changmian;Wang, Yu;Zeng, Liwang
关键词：Pyropia yezoensis; Freshwater stress; Physiological activities; Transcriptome; Metabolome
-
Changes in key volatile components associated with leaf quality of Pandanus amaryllifolius Roxb. alongside growth duration
作者：Yan, Lu;Zhang, Ang;Qin, Xiaowei;Yu, Huan;Ji, Xunzhi;He, Shuzhen;Zong, Ying;Gu, Chunhe;Feng, Zhen;Hu, Lisong;Lu, Zhiqing;Yan, Lu;Lu, Zhiqing
关键词：GC-MS; VOCs; 2-Acetyl-1-pyrroline; Squalene; Agronomic traits; Leaf quality
-
Evolutionary dynamics of mitochondrial genomes and intracellular transfers among diploid and allopolyploid cotton species
作者：Kong, Jiali;Wang, Jie;Nie, Liyun;Wu, Zhiqiang;Kong, Jiali;Zou, Changsong;Wu, Zhiqiang;Kong, Jiali;Wang, Jie;Nie, Liyun;Tembrock, Luke R.;Kan, Shenglong;Ma, Xiongfeng;Wendel, Jonathan F.
关键词：Cotton; Mitochondrial genome; Plastid genome; Alternative conformation; Evolutionary rate variation; Intracellular transfer
-
A wheat phytohormone atlas spanning major tissues across the entire life cycle provides novel insights into cytokinin and jasmonic acid interplay
作者：Yin, Huanran;Liu, Wei;Hu, Xin;Jia, Jingqi;Liu, Mengmeng;Wei, Jiaqi;Cheng, Yikeng;Gong, Xin;Li, Qiang;Yan, Wenhao;Chen, Wei;Jia, Jizeng;Gao, Lifeng;Fernie, Alisdair R.
关键词：wheat; phytohormones; metabolic regulatory network; DOF
-
Boosting Cost-Efficiency in Robotics: A Distributed Computing Approach for Harvesting Robots
作者：Xie, Feng;Xie, Feng;Li, Tao;Feng, Qingchun;Li, Tao;Feng, Qingchun;Chen, Liping;Zhao, Chunjiang;Zhao, Hui
关键词：5G network; computation allocation; edge computing; harvesting robot; visual system
-
Difference Analysis on Virulence Genes, Biofilms and Antimicrobial Susceptibility of Escherichia coli from Clinical and Subclinical Bovine Mastitis
作者：Zuo, Jiakun;Fu, Shaodong;Pan, Zihao;Yu, Yong;Miao, Jinfeng;Zuo, Jiakun;Lv, Zhaoyang;Lian, Liyan;Zhang, Haiyang;Jiang, Wei;Chen, Zhaoguo;Han, Xiangan;Lv, Zhaoyang;Wu, Zihao;Wu, Jing;Chen, Wei;Yin, Huifang;Yi, Yunpeng
关键词：Escherichia coli; bovine mastitis; MLST; biofilm; virulence gene; antimicrobial resistance
