Influence of epistatic segregation distortion loci on genetic marker linkages in Japanese flounder

文献类型: 外文期刊

第一作者: Zhao, Jingli

作者: Zhao, Jingli;Gao, Jin;Yang, Runqing;Han, Dandan;Shi, Kuntao;Wang, Li

作者机构:

关键词: Distorted segregation;Genetic linkage map;SDL;Epistasis;Japanese flounder

期刊名称:GENOMICS ( 影响因子:5.736; 五年影响因子:4.939 )

ISSN: 0888-7543

年卷期: 2018 年 110 卷 1 期

页码:

收录情况: SCI

摘要: For genetic linkage analysis of Japanese flounder, 160 doubled haploids (DH) were artificially produced using mitotic gynogenesis and were genotyped for 458 simple sequence repeat (SSR) markers, 101 of which show distortional segregation. The genetic linkage map was constructed by modifying recombination fractions between the distorted markers. Between the corrected and uncorrected genetic maps, there were considerable differences in genetic distance, but not in relative locations among markers. Using a liability model, a segregation distortion locus (SDL), with an additive genetic effect of 1.772, was mapped between markers BDHYP387 and Poli56TUF of chromosome 24 in the corrected genetic map. Additionally, six pairs of epistatic SDLs were identified on chromosomes 1, 5, 8, 9, 23, and 24. Changes in genetic distances between markers did not occur on chromosome regions with main effect SDLs. However, most chromosome regions where genetic distances changed covered the detected epistatic SDLs. This study concluded that epistatic SDLs decrease linkages between markers and lengthen genetic distances in Japanese flounder. This finding has been partially validated in other DH populations derived from three female Japanese flounders.

分类号:

  • 相关文献

[1]Bayesian Analysis for Genetic Architectures of Body Weights and Morphological Traits Using Distorted Markers in Japanese Flounder Paralichthys olivaceus. Cui, Yan,Wang, Hongwei,Liu, Haijin,Yang, Runqing,Cui, Yan,Qiu, Xuemei.

[2]Effects of dietary supplementation of A3 alpha-peptidoglycan on innate immune responses and defense activity of Japanese flounder (Paralichthys olivaceus). Zhou, J,Song, XL,Huang, J,Wang, XH. 2006

[3]Screening and analysis of PoAkirin1 and two related genes in response to immunological stimulants in the Japanese flounder (Paralichthys olivaceus). Yang, Chang-Geng,Sun, Bing,Liu, Shan-Shan,Chen, Song-Lin,Yang, Chang-Geng,Wang, Xian-Li,Zhang, Bo. 2013

[4]Estimation of genetic parameters for growth traits of Japanese flounder Paralichthys olivaceus using an animal model. Liu, Yong-Xin,Liu, Hai-Jin,Wang, Gui-Xing,Wang, Yu-Fen,Si, Fei,Sun, Zhao-Hui,Zhang, Xiao-Yan,Wang, Jia-Di. 2011

[5]Production and verification of heterozygous clones in Japanese flounder, Paralichthys olivaceus by microsatellite marker. Liu, Haijin,Liu, Yongxin,Wang, Guixing,Wang, Yufen,Si, Fei,Sun, Zhaohui,Zhang, Xiaoyan,Liu, Yi,Hou, Jilun. 2011

[6]Major histocompatibility complex class IIB allele polymorphism and its association with resistance/susceptibility to Vibrio anguillarum in Japanese flounder (Paralichthys olivaceus). Zhang, Y. X.,Chen, S. L.,Liu, Y. G.,Sha, Z. X.,Liu, Z. J.. 2006

[7]Assessing the genetic structure of three Japanese flounder (Paralichthys olivaceus) stocks by microsatellite markers. Liu, YG,Chen, SL,Li, BF. 2005

[8]Genetic verification of doubled haploid Japanese flounder, Paralichthys olivaceus by genotyping telomeric microsatellite loci. Liu, Yongxin,Liu, Haijin,Wang, Guixing,Wang, Yufen,Si, Fei,Sun, Zhaohui,Zhang, Xiaoyan,Liu, Yi,Hou, Jilun. 2012

[9]Efficacy of Vibrio anguillarum antigen administered by intraperitoneal injection route in Japanese flounder, Paralichthys olivaceus (Temminck et Schlegel). Li, J,Gao, DM,Wang, Q,Wang, JY,Wang, QY. 2005

[10]Genetic diversity in three Japanese flounder (Paralichthys olivaceus) populations revealed by ISSR markers. Liu, YG,Chen, SL,Li, J,Li, BF. 2006

[11]Production and confirmation of clones using gynogenesis in Japanese flounder. Liu, Haijin,Liu, Yongxin,Wang, Guixing,Wang, Yufen,Si, Fei,Sun, Zhaohui,Zhang, Xiaoyan,Liu, Yi,Hou, Jilun. 2011

[12]Molecular identification and expression analysis of natural resistance associated macrophage protein (Nramp) cDNA from Japanese flounder (Paralichthys olivaceus). Chen, SL,Wang, ZJ,Xu, MY,Gui, JF. 2006

[13]Constructing a genetic linkage map and mapping quantitative trait loci for skeletal traits in Japanese flounder. Liu, Yi,Zhang, Xiaoyan,Si, Fei,Sun, Zhaohui,Wang, Guixing,Wang, Yufen,Liu, Yi,Liu, Yongxin,Liu, Yingjie,Yang, Runqing,Liu, Haijin.

[14]Proteome profiling reveals immune responses in Japanese flounder (Paralichthys olivaceus) infected with Edwardsiella tarda by iTRAQ analysis. Wang, Lei,Shao, Changwei,Xu, Wenteng,Zhou, Qian,Wang, Na,Chen, Songlin,Wang, Lei,Shao, Changwei,Xu, Wenteng,Zhou, Qian,Wang, Na,Chen, Songlin.

[15]Genome-wide SNP identification for the construction of a high-resolution genetic map of Japanese flounder (Paralichthys olivaceus): applications to QTL mapping of Vibrio anguillarum disease resistance and comparative genomic analysis. Shao, Changwei,Liu, Yang,Wang, Lei,Tian, Yongsheng,Chen, Songlin,Shao, Changwei,Liu, Yang,Wang, Lei,Tian, Yongsheng,Chen, Songlin,Shao, Changwei,Sakamoto, Takashi,Niu, Yongchao,Xie, Zhiyuan,Tai, Shuaishuai,Rastas, Pasi,Li, Hengde,Jiang, Yong.

[16]Molecular cloning, structure and expressional profiles of two novel single-exon genes (PoCCR6A and PoCCR6B) in the Japanese flounder (Paralichthys olivaceus). Wang, Lei,Zhang, Yong-zhen,Xu, Wen-teng,Jia, Xiao-dong,Chen, Song-lin.

[17]Tissue-specific accumulation of cadmium and its effects on antioxidative responses in Japanese flounder juveniles. Cao, Liang,Huang, Wei,Shan, Xiujuan,Dou, Shuozeng,Huang, Wei,Shan, Xiujuan,Ye, Zhenjiang.

[18]QTL mapping and epistatic interaction analysis in asparagus bean for several characterized and novel horticulturally important traits. Xu, Pei,Wu, Xiaohua,Wang, Baogen,Hu, Tingting,Lu, Zhongfu,Liu, Yonghua,Qin, Dehui,Wang, Sha,Li, Guojing. 2013

[19]QTL x environment interactions in rice. I. Heading date and plant height. Li, ZK,Yu, SB,Lafitte, HR,Huang, N,Courtois, B,Hittalmani, S,Vijayakumar, CHM,Liu, GF,Wang, GC,Shashidhar, HE,Zhuang, JY,Zheng, KL,Singh, VP,Sidhu, JS,Srivantaneeyakul, S,Khush, GS. 2003

[20]QTL Detection and Epistasis Analysis for Heading Date Using Single Segment Substitution Lines in Rice (Oryza sativa L.). Li Guang-xian,Li Si-shen,Chen Ai-hua,Liu Xu,Wang Wen-ying,Ding Han-feng,Li Jun,Liu Wei,Yao Fang-yin,Li Guang-xian. 2014

作者其他论文 更多>>