Complete Chloroplast Genome of Corethrodendron fruticosum (Papilionoideae: Fabaceae): Comparative and Phylogenetic Analysis
文献类型: 外文期刊
第一作者: Niu, Tianxiu
作者: Niu, Tianxiu;Tao, Qibo;Niu, Tianxiu;Tian, Chunyu;Yang, Yanting;Liu, Qian;Liu, Lemeng;Li, Zhiyong;Wu, Zinian;Tian, Chunyu;Yang, Yanting;Liu, Qian;Liu, Lemeng;Li, Zhiyong;Wu, Zinian
作者机构:
关键词: Corethrodendron fruticosum; chloroplast genome; codon usage; repeat analysis; phylogenetic relationship
期刊名称:GENES ( 影响因子:3.5; 五年影响因子:3.9 )
ISSN:
年卷期: 2023 年 14 卷 6 期
页码:
收录情况: SCI
摘要: Corethrodendron fruticosum is an endemic forage grasses in China with high ecological value. In this study, the complete chloroplast genome of C. fruticosum was sequenced using Illumina paired-end sequencing. The C. fruticosum chloroplast genome was 123,100 bp and comprised 105 genes, including 74 protein-coding genes, 4 rRNA-coding genes, and 27 tRNA-coding genes. The genome had a GC content of 34.53%, with 50 repetitive sequences and 63 simple repeat repetitive sequences that did not contain reverse repeats. The simple repeats included 45 single-nucleotide repeats, which accounted for the highest proportion and primarily comprised A/T repeats. A comparative analysis of C. fruticosum, C. multijugum, and four Hedysarum species revealed that the six genomes were highly conserved, with differentials primarily located in the conserved non-coding regions. Moreover, the accD and clpP genes in the coding regions exhibited high nucleotide variability. Accordingly, these genes may serve as molecular markers for the classification and phylogenetic analysis of Corethrodendron species. Phylogenetic analysis further revealed that C. fruticosum and C. multijugum appeared in different clades than the four Hedysarum species. The newly sequenced chloroplast genome provides further insights into the phylogenetic position of C. fruticosum, which is useful for the classification and identification of Corethrodendron.
分类号:
- 相关文献
作者其他论文 更多>>
-
Genome Resource of Rhizoctonia solani Anastomosis Group 4 Strain AG4-JY, a Pathomycete of Sheath Blight of Foxtail Millet
作者:Liu, Yuwei;Mao, Yanan;Shen, Shen;Hao, Zhimin;Li, Zhiyong;Jia, Lixia;Zhou, Cheng
关键词:fungal pathogens; genome sequence; Rhizoctonia solani; sheath blight
-
Genome Sequence Resource of Ustilago crameri, a Fungal Pathogen Causing Millet Smut Disease of Foxtail Millet
作者:Liu, Yuwei;Hao, Zhimin;Sun, Hehe;Liu, Jiayue;Shen, Shen;Li, Zhiyong;Zhou, Cheng;Liu, Yuwei;Hao, Zhimin
关键词:foxtail millet; fungal pathogens; genome sequence; Ustilago crameri
-
ORF355 confers enhanced salinity stress adaptability to S-type cytoplasmic male sterility maize by modulating the mitochondrial metabolic homeostasis
作者:Xiao, Senlin;Song, Wei;Xing, Jinfeng;Su, Aiguo;Zhao, Yanxin;Li, Chunhui;Shi, Zi;Li, Zhiyong;Wang, Shuai;Zhang, Ruyang;Zhao, Jiuran;Pei, Yuanrong;Chen, Huabang
关键词:cytoplasmic male sterility; metabolic homeostasis; mitochondria; salinity stress adaptability; Zea mays L
-
Effects of fermented Chinese herb residues on growth performance, nutrient apparent digestibility, serum biochemical indices and faecal microbial flora in beef cattle
作者:Liu, Qian;Guo, Li;Zhao, Lifeng;Wang, Chunqing;Zhong, Wei;Liu, Qian;Luo, Guoliang;Li, Xiaocheng
关键词:Fermented Chinese herb residue; Simmental beef cattle; growth performance; nutrient apparent digestibility; serum biochemistry; faecal microbes; Ruminant nutrition and feeding
-
Genetic analysis of phenotypic plasticity identifies BBX6 as the candidate gene for maize adaptation to temperate regions
作者:Ma, Yuting;Yang, Wenyan;Li, Fenghai;Du, Wanli;Ma, Yuting;Yang, Wenyan;Zhang, Hongwei;Wang, Pingxi;Liu, Qian
关键词:maize; plasticity; candidate gene; domestication; selective sweep
-
Population Genetic Analysis of a Bread Wheat Panel from Northern and Huang-Huai Agro-Ecological Regions in China
作者:Jin, Xiaojie;Song, Zheng;Zhao, Xiaobin;Peng, Yanchun;Jin, Xiaojie;Liu, Qian;Zhao, Yun;Zhang, Yingjun;Gao, Huimin;He, Wenchuang;Wang, Guijuan;Ren, Xifeng;Zhou, Yu;Ren, Xifeng
关键词:bread wheat; SNP; population structure; genetic diversity; ancestry informative markers
-
Identification of Allele-Specific Expression Genes Associated with Maize Heterosis
作者:Ma, Yuting;Yang, Wenyan;Du, Wanli;Ma, Yuting;Yang, Wenyan;Zhang, Hongwei;Wang, Pingxi;Liu, Qian
关键词:maize; midparent heterosis; dominance; epistasis; allele-specific expression gene