Integrated miRNA-mRNA analysis reveals candidate miRNA family regulating arbuscular mycorrhizal symbiosis of Poncirus trifoliata
文献类型: 外文期刊
第一作者: Ji, Chuanya
作者: Ji, Chuanya;He, Chuan;Huang, Shengyu;Yu, Huimin;Pan, Zhiyong;Song, Fang;An, Jianyong;Lu, Hang;Bucher, Marcel;Xiao, Shunyuan
作者机构:
关键词: AM symbiosis; citrus; miR159b; miR477a; transcription factors (TFs)
期刊名称:PLANT CELL AND ENVIRONMENT ( 影响因子:7.3; 五年影响因子:8.1 )
ISSN: 0140-7791
年卷期: 2023 年 46 卷 6 期
页码:
收录情况: SCI
摘要: Over 70% land plants live in mutualistic symbiosis with arbuscular mycorrhizal (AM) fungi, and maintenance of symbiosis requires transcriptional and post-transcriptional regulation. The former has been widely studied, whereas the latter mediated by symbiotic microRNAs (miRNAs) remains obscure, especially in woody plants. Here, we performed high-throughput sequencing of the perennial woody citrus plant Poncirus trifoliata and identified 3750 differentially expressed genes (DEGs) and 42 miRNAs (DEmiRs) upon AM fungal colonization. By analyzing cis-regulatory elements in the promoters of the DEGs, we predicted 329 key AM transcription factors (TFs). A miRNA-mRNA regulatory network was then constructed by integrating these data. Several candidate miRNA families of P. trifoliata were identified whose members target known symbiotic genes, such as miR167h-AMT2;3 and miR156e-EXO70I, or key TFs, such as miR164d-NAC and miR477a-GRAS, thus are involved in AM symbiotic processes of fungal colonization, arbuscule development, nutrient exchange and phytohormone signaling. Finally, analysis of selected miRNA family revealed that a miR159b conserved in mycorrhizal plant species and a Poncirus-specific miR477a regulate AM symbiosis. The role of miR477a was likely to target GRAS family gene RAD1 in citrus plants. Our results not only revealed that miRNA-mRNA network analysis, especially miRNA-TF analysis, is effective in identifying miRNA family regulating AM symbiosis, but also shed light on miRNA-mediated post-transcriptional regulation of AM symbiosis in woody citrus plants.
分类号:
- 相关文献
作者其他论文 更多>>
-
Detection of neonicotinoids in agricultural products using magnetic molecularly imprinted polymers-surface enhanced Raman spectroscopy
作者:Cao, Xiaolin;Hu, Yexuan;Yu, Huimin;Sun, Shuai;Xu, Dan;Zhang, Ziping;Cong, Shuang;She, Yongxin
关键词:Magnetic molecularly imprinted polymers; Surface-enhanced Raman spectroscopy; Neonicotinoids; Agricultural products
-
A Rapid and Visual Method for Nucleic Acid Detection of Escherichia coli O157:H7 Based on CRISPR/Cas12a-PMNT
作者:Jiang, Wei;He, Chuan;Bai, Lan;Chen, Yifan;Jia, Junwei;Lv, Beibei;Tang, Xueming;Wu, Xiao;Jiang, Wei;He, Chuan;Bai, Lan;Chen, Yifan;Pan, Aihu;Lv, Beibei;Tang, Xueming;Wu, Xiao;Jiang, Wei;He, Chuan;Bai, Lan;Chen, Yifan;Jia, Junwei;Pan, Aihu;Lv, Beibei;Tang, Xueming;Wu, Xiao;Tang, Xueming
关键词:foodborne pathogenic bacteria; Escherichia coli O157; H7; nucleic acid detection; POCT; visual method; CRISPR-Cas12a; PMNT
-
Autophagy Is Required to Sustain Increased Intestinal Cell Proliferation during Phenotypic Plasticity Changes in Honey Bee (Apis mellifera)
作者:Guo, Yueqin;Hu, Ruoyang;Li, Naikang;Li, Nannan;Wu, Jiangli;Yu, Huimin;Tan, Jing;Xu, Shufa;Li, Zhouhua
关键词:honey bee (Apis mellifera); autophagy; phenotypic plasticity; midgut; cell proliferation
-
Stress response and tolerance mechanisms of NaHCO3 exposure based on biochemical assays and multi-omics approach in the liver of crucian carp (Carassius auratus)
作者:Wei, Xiao-feng;Liu, Ying-jie;Li, Shan-wei;Ding, Lu;Han, Shi-cheng;Chen, Zhong-xiang;Wang, Peng;Sun, Yan-chun;Wei, Xiao-feng;Lu, Hang;Sun, Yan-chun;Liu, Ying-jie;Li, Shan-wei;Ding, Lu;Sun, Yan-chun
关键词:Saline-alkaline stress; Fish; Liver; Biochemical analysis; Metabolomics; Transcriptomics
-
A novel bud mutant of navel orange (Citrus sinensis) shows tolerance to chlorosis in acidic and magnesium-deficient soils
作者:Chaudhry, Ahmad Hassan;Du, Wei;Liu, Yongzhong;Peng, Shu-Ang;Deng, Xiuxin;Pan, Zhiyong;Hussain, Syed Bilal;Du, Wei
关键词:Citrus; Chlorosis; Magnesium deficiency; Scion-rootstock combination
-
CsMYB15 positively regulates Cs4CL2-mediated lignin biosynthesis during juice sac granulation in navel orange
作者:Song, Fang;Li, Zixuan;Wang, Ce;Jiang, Yingchun;Wang, Zhijing;He, Ligang;Ma, Xiaofang;Zhang, Yu;Song, Xin;Wu, Liming;Song, Fang;Jiang, Yingchun;Liu, Jihong;Wu, Liming;Liu, Jihong
关键词:'Lane late' navel orange; granulation; transcription factor; CsMYB15; lignin biosynthesis
-
Plant lysin motif extracellular proteins are required for arbuscular mycorrhizal symbiosis
作者:Yu, Huimin;Bai, Fuxi;Ji, Chuanya;Fan, Zhengyan;Luo, Jinying;Ouyang, Bo;Deng, Xiuxin;Pan, Zhiyong;Bai, Fuxi;Xiao, Shunyuan;Bisseling, Ton;Limpens, Erik
关键词:arbuscular mycorrhizal symbiosis; immune response; LysMe proteins; chitin; Medicago truncatula